Variant report

Variant	rs7255186
Chromosome Location	chr19:40520531-40520532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:40514284..40516940-chr19:40519055..40521737,2	K562	blood:
2	chr19:40520246..40523221-chr19:40527503..40530294,2	K562	blood:
3	chr19:40520341..40522642-chr19:40525632..40527204,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF780B-1	chr19:40519721-40520681	NONHSAT066336

Variant related genes	Relation type
ENSG00000268166	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11882408	1.00[CHD][hapmap]
rs450095	0.87[EUR][1000 genomes]
rs55724336	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59307138	1.00[EUR][1000 genomes]
rs60037732	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61655884	0.87[EUR][1000 genomes]
rs7245925	0.87[EUR][1000 genomes]
rs7249514	1.00[EUR][1000 genomes]
rs7250763	1.00[EUR][1000 genomes]
rs7252478	0.85[AFR][1000 genomes]
rs73543966	1.00[EUR][1000 genomes]
rs73545987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547631	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547632	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73547672	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73549807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73549809	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73549848	1.00[EUR][1000 genomes]
rs73551667	0.87[EUR][1000 genomes]
rs73551692	0.87[EUR][1000 genomes]
rs8106043	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs8106753	0.87[EUR][1000 genomes]
rs8109323	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs8110709	1.00[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758498	chr19:40227904-40521130	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv2758760	chr19:40227904-40521130	Genic enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv428022	chr19:40227904-40521130	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40504000-40533800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:40511600-40522000	ZNF genes & repeats	A549	lung
3	chr19:40512000-40527200	ZNF genes & repeats	Liver	Liver
4	chr19:40513400-40521800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:40513600-40522200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr19:40514000-40523000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr19:40515400-40521600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr19:40515600-40522200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr19:40517400-40521400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr19:40517400-40522800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr19:40517600-40521200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
12	chr19:40517600-40521600	ZNF genes & repeats	Fetal Muscle Leg	muscle
13	chr19:40517600-40521800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
14	chr19:40517600-40521800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr19:40517600-40522200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr19:40517600-40522200	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr19:40517600-40522200	ZNF genes & repeats	Fetal Lung	lung
18	chr19:40517600-40522400	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr19:40517600-40522400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr19:40517800-40520800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr19:40517800-40521000	Weak transcription	Lung	lung
22	chr19:40517800-40521200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
23	chr19:40517800-40521400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr19:40517800-40522000	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr19:40518200-40521800	Weak transcription	Placenta	Placenta
26	chr19:40519000-40520800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
27	chr19:40519000-40520800	Strong transcription	Fetal Thymus	thymus
28	chr19:40519000-40521000	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr19:40519000-40521400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
30	chr19:40519000-40521400	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr19:40519000-40521400	ZNF genes & repeats	HepG2	liver
32	chr19:40519000-40521400	ZNF genes & repeats	NHDF-Ad	bronchial
33	chr19:40519000-40521800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr19:40519200-40520800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr19:40519200-40520800	ZNF genes & repeats	Psoas Muscle	Psoas
36	chr19:40519200-40521000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
37	chr19:40519200-40521400	ZNF genes & repeats	Fetal Brain Female	brain
38	chr19:40519200-40521400	ZNF genes & repeats	HSMMtube	muscle
39	chr19:40519200-40521600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr19:40519200-40521600	ZNF genes & repeats	Fetal Kidney	kidney
41	chr19:40519200-40521600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
42	chr19:40519200-40521800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr19:40519200-40521800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
44	chr19:40519200-40522000	ZNF genes & repeats	Brain Anterior Caudate	brain
45	chr19:40519200-40522200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
46	chr19:40519200-40522400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
47	chr19:40519200-40522400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
48	chr19:40519400-40520600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
49	chr19:40519400-40520800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr19:40519400-40521000	ZNF genes & repeats	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links