Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr19:40533469-40533701	HepG2	liver:	n/a	n/a
2	POLR2A	chr19:40531707-40536932	PANC-1	pancreas:	n/a	n/a
3	POLR2A	chr19:40533362-40534016	HepG2	liver:	n/a	n/a
4	POLR2A	chr19:40532929-40533995	HepG2	liver:	n/a	n/a
5	REST	chr19:40531505-40536927	PANC-1	pancreas:	n/a	n/a
6	POLR2A	chr19:40533456-40533833	PFSK-1	brain:	n/a	n/a
7	POLR2A	chr19:40528255-40543887	PANC-1	pancreas:	n/a	n/a
8	POLR2A	chr19:40533523-40533685	HepG2	liver:	n/a	n/a
9	FOXA1	chr19:40533433-40533715	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000269069	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs450095	0.87[EUR][1000 genomes]
rs55724336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59307138	1.00[EUR][1000 genomes]
rs60037732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61655884	0.87[EUR][1000 genomes]
rs7245925	0.87[EUR][1000 genomes]
rs7249514	1.00[EUR][1000 genomes]
rs7250763	1.00[EUR][1000 genomes]
rs7255186	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73543966	1.00[EUR][1000 genomes]
rs73545987	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73545999	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547626	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73547632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73549807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73549809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73549848	1.00[EUR][1000 genomes]
rs73551667	0.87[EUR][1000 genomes]
rs73551692	0.87[EUR][1000 genomes]
rs8106043	0.87[EUR][1000 genomes]
rs8106753	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40504000-40533800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:40521200-40540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr19:40528600-40543800	ZNF genes & repeats	Liver	Liver
4	chr19:40529000-40543800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:40529200-40543800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:40529200-40543800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr19:40529400-40533800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr19:40529400-40534200	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:40530600-40543800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:40532400-40534600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr19:40532600-40535000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
12	chr19:40532800-40534000	ZNF genes & repeats	Aorta	Aorta
13	chr19:40532800-40534200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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