Variant report

Variant	rs61141017
Chromosome Location	chr5:94006794-94006795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1549180	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17327757	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328137	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328296	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328400	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328434	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328525	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328588	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17328637	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17387486	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2029910	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2173020	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56730205	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56813337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57412880	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58306231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58408645	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59077119	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60307858	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61427096	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6898151	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132656	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132666	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132677	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132681	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132682	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132683	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132688	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132692	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132693	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73132701	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73134674	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73134681	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73134683	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73134687	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73134693	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73134696	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73140270	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73140284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73140285	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73144170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144175	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73144177	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73144193	0.90[EUR][1000 genomes]
rs73145094	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73150143	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73150166	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv462254	chr5:93956937-94056825	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv598953	chr5:93956937-94056825	ZNF genes & repeats Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv882386	chr5:93973177-94008969	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv882387	chr5:94001476-94071404	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93955800-94027600	Weak transcription	NH-A	brain
2	chr5:93969400-94008400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:93975600-94012000	Weak transcription	Aorta	Aorta
4	chr5:93976800-94025000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:93981000-94012000	Weak transcription	Left Ventricle	heart
6	chr5:93990600-94008200	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:93991200-94049000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:93994200-94010200	Weak transcription	NHEK	skin
9	chr5:93994200-94012000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr5:93994200-94030800	Weak transcription	Right Ventricle	heart
11	chr5:93994200-94047200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:93994400-94012000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:93994400-94022600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:93994400-94025400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr5:93994400-94027600	Weak transcription	Liver	Liver
16	chr5:93994400-94027600	Weak transcription	NHDF-Ad	bronchial
17	chr5:93994400-94029000	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:93994400-94048800	Weak transcription	Small Intestine	intestine
19	chr5:93994600-94007400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:93994600-94026600	Weak transcription	Fetal Kidney	kidney
21	chr5:93994600-94029200	Weak transcription	Brain Anterior Caudate	brain
22	chr5:93994600-94032200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:93995400-94012000	Weak transcription	HepG2	liver
24	chr5:93995400-94024800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr5:93995600-94009600	Weak transcription	Fetal Brain Female	brain
26	chr5:93995600-94024400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr5:93995600-94033000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:93995600-94050400	Weak transcription	Esophagus	oesophagus
29	chr5:93995800-94010600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr5:93995800-94012000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr5:93995800-94012000	Weak transcription	HSMM	muscle
32	chr5:93996000-94024000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr5:93996000-94027600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr5:93996000-94036000	Weak transcription	GM12878-XiMat	blood
35	chr5:93996200-94007400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:93996200-94026600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:93996200-94029800	Weak transcription	Ovary	ovary
38	chr5:93996400-94008000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr5:93996400-94012000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:93996600-94012000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr5:93996600-94019200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr5:93996600-94023000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr5:93996600-94027800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr5:93996600-94048400	Weak transcription	Lung	lung
45	chr5:93996800-94013800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr5:93996800-94036200	Weak transcription	Gastric	stomach
47	chr5:93997000-94008000	Strong transcription	Hela-S3	cervix
48	chr5:93997000-94012000	Weak transcription	Spleen	Spleen
49	chr5:93997000-94033800	Weak transcription	Placenta	Placenta
50	chr5:93997400-94012000	Weak transcription	Pancreas	Pancrea

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