Variant report

Variant	rs61427096
Chromosome Location	chr5:93900212-93900213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr5:93900000-93900268	GM12878	blood:	n/a	n/a
2	POLR2A	chr5:93900028-93900235	A549	lung:	n/a	n/a

Variant related genes	Relation type
MTND5P12	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1549180	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17327757	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328137	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328296	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328331	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328400	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328434	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328525	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328588	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328637	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17387486	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2029910	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173020	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56730205	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56813337	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57412880	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58306231	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58408645	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59077119	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60307858	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61141017	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6898151	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132656	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132666	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132677	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132681	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132682	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132683	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132688	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132692	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132693	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73132701	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134674	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134681	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134683	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134687	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73134693	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73140284	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73140285	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73144155	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73144170	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73144175	0.81[EUR][1000 genomes]
rs73144177	0.81[EUR][1000 genomes]
rs73145094	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1023421	chr5:93679661-93911066	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv534495	chr5:93789736-93962131	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv598952	chr5:93823951-93956986	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv964906	chr5:93899345-93909772	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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