Variant report

Variant	rs61141626
Chromosome Location	chr8:67398904-67398905
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67398115..67399973-chr8:67424030..67426495,2	MCF-7	breast:
2	chr8:67383309..67385950-chr8:67398891..67400480,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169085	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10095792	0.94[ASN][1000 genomes]
rs10283103	0.94[ASN][1000 genomes]
rs2718997	0.94[ASN][1000 genomes]
rs4386964	0.94[ASN][1000 genomes]
rs56001676	0.94[ASN][1000 genomes]
rs56044023	0.94[ASN][1000 genomes]
rs57394870	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59292708	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59352083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60423755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61484440	0.93[EUR][1000 genomes]
rs73255675	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73255676	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73257637	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257641	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257643	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257644	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257646	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257650	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73257661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv6236	chr8:67359312-67403981	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1026137	chr8:67376420-67408122	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67380800-67405200	Weak transcription	Aorta	Aorta
2	chr8:67387400-67406400	Weak transcription	Liver	Liver
3	chr8:67395000-67403800	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:67396000-67406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:67396200-67402400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:67396200-67406000	Weak transcription	NHDF-Ad	bronchial
7	chr8:67396800-67404800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:67397200-67403800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:67397400-67400200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr8:67397600-67399400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:67398200-67399400	Enhancers	NHLF	lung
12	chr8:67398400-67400000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr8:67398400-67400200	Enhancers	Spleen	Spleen
14	chr8:67398400-67402800	Weak transcription	Osteobl	bone
15	chr8:67398400-67404000	Enhancers	Primary B cells from cord blood	blood
16	chr8:67398600-67399600	Weak transcription	NH-A	brain
17	chr8:67398600-67400000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr8:67398600-67402200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:67398600-67405200	Weak transcription	Brain Angular Gyrus	brain
20	chr8:67398800-67403200	Enhancers	GM12878-XiMat	blood
21	chr8:67398800-67405800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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