Variant report

Variant	rs61484440
Chromosome Location	chr8:67369857-67369858
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:67367251..67370240-chr8:67562662..67564942,2	K562	blood:
2	chr8:67368485..67371409-chr8:67521786..67525460,5	MCF-7	breast:
3	chr8:67365709..67368396-chr8:67368954..67371561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185697	Chromatin interaction
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3739335	0.80[EUR][1000 genomes]
rs57394870	0.93[EUR][1000 genomes]
rs59292708	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59352083	0.93[EUR][1000 genomes]
rs60423755	0.93[EUR][1000 genomes]
rs61141626	0.93[EUR][1000 genomes]
rs73255675	0.93[EUR][1000 genomes]
rs73255676	0.93[EUR][1000 genomes]
rs73257635	0.93[EUR][1000 genomes]
rs73257637	0.93[EUR][1000 genomes]
rs73257641	0.93[EUR][1000 genomes]
rs73257643	0.80[EUR][1000 genomes]
rs73257644	0.93[EUR][1000 genomes]
rs73257646	0.93[EUR][1000 genomes]
rs73257648	0.93[EUR][1000 genomes]
rs73257650	0.93[EUR][1000 genomes]
rs73257661	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv6236	chr8:67359312-67403981	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67353600-67372400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:67356200-67374400	Strong transcription	Liver	Liver
3	chr8:67359000-67372200	Weak transcription	HSMMtube	muscle
4	chr8:67359200-67370200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:67359200-67370400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:67359400-67384400	Weak transcription	Fetal Kidney	kidney
7	chr8:67361200-67373800	Strong transcription	Fetal Intestine Small	intestine
8	chr8:67361400-67377400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:67361600-67374400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:67364400-67375800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr8:67364600-67373400	Weak transcription	Spleen	Spleen
12	chr8:67364600-67378800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:67364800-67384000	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:67365200-67374600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr8:67365200-67377400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:67365400-67372400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:67365400-67383800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:67365600-67372200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:67365600-67372200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:67365600-67375400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:67365800-67370200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:67365800-67370200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:67365800-67372400	Weak transcription	Brain Angular Gyrus	brain
24	chr8:67365800-67379600	Weak transcription	Esophagus	oesophagus
25	chr8:67366000-67370400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:67366000-67370600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:67366000-67372200	Weak transcription	Brain Anterior Caudate	brain
28	chr8:67366000-67373400	Weak transcription	Gastric	stomach
29	chr8:67366000-67374000	Weak transcription	Right Ventricle	heart
30	chr8:67366000-67376600	Weak transcription	Right Atrium	heart
31	chr8:67366200-67370200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:67366400-67371400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:67366400-67372200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr8:67366400-67372200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr8:67366400-67373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:67367200-67370800	Strong transcription	Pancreas	Pancrea
37	chr8:67367600-67371000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr8:67367600-67371200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr8:67367600-67372200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:67368000-67372200	Weak transcription	Brain Substantia Nigra	brain
41	chr8:67368200-67370400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr8:67368200-67372600	Weak transcription	Left Ventricle	heart
43	chr8:67368400-67384400	Weak transcription	Psoas Muscle	Psoas
44	chr8:67368800-67372400	Weak transcription	Ovary	ovary
45	chr8:67368800-67374000	Weak transcription	Fetal Intestine Large	intestine
46	chr8:67369000-67370400	Weak transcription	Hela-S3	cervix
47	chr8:67369000-67370800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:67369000-67371000	Weak transcription	HMEC	breast
49	chr8:67369000-67371200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:67369000-67371800	Enhancers	A549	lung

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