Variant report

Variant	rs61142815
Chromosome Location	chr7:112032527-112032528
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112030505..112033411-chr7:112090112..112091685,2	MCF-7	breast:
2	chr7:112032001..112033811-chr7:112035670..112039221,3	MCF-7	breast:
3	chr7:112031184..112032769-chr7:112035283..112037253,2	MCF-7	breast:
4	chr7:111844038..111847203-chr7:112030805..112032804,3	MCF-7	breast:
5	chr7:112023462..112026199-chr7:112030712..112034136,5	MCF-7	breast:
6	chr7:111850231..111853782-chr7:112032412..112034689,3	MCF-7	breast:
7	chr7:111857821..111859574-chr7:112030551..112032739,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128512	Chromatin interaction
ENSG00000198839	Chromatin interaction
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11973327	0.89[EUR][1000 genomes]
rs11976430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983716	0.89[EUR][1000 genomes]
rs34571830	0.93[AFR][1000 genomes]
rs55731771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55780403	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73715502	0.93[AFR][1000 genomes]
rs73717512	1.00[AFR][1000 genomes]
rs73717517	1.00[AFR][1000 genomes]
rs73717527	1.00[AFR][1000 genomes]
rs73717530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717532	0.93[AFR][1000 genomes]
rs73717533	0.93[AFR][1000 genomes]
rs73717535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73717543	0.87[AFR][1000 genomes]
rs73717548	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv1020212	chr7:111944370-112032596	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	esv3325611	chr7:112030791-112032839	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112030800-112032600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:112031000-112032600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:112031000-112032600	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:112031000-112032600	Active TSS	Adipose Nuclei	Adipose
5	chr7:112031000-112032600	Active TSS	Brain Substantia Nigra	brain
6	chr7:112031000-112032600	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr7:112031000-112032800	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr7:112031000-112032800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr7:112031200-112032600	Active TSS	H9 Cell Line	embryonic stem cell
10	chr7:112031200-112032600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:112031200-112032600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:112031200-112032600	Active TSS	HSMMtube	muscle
13	chr7:112031200-112032800	Active TSS	HSMM	muscle
14	chr7:112031400-112032600	Active TSS	Pancreas	Pancrea
15	chr7:112031400-112032800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr7:112032000-112032600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr7:112032000-112032600	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr7:112032000-112032600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr7:112032000-112032600	Enhancers	Primary hematopoietic stem cells	blood
20	chr7:112032000-112032600	Active TSS	Fetal Kidney	kidney
21	chr7:112032000-112032600	Flanking Active TSS	HUVEC	blood vessel
22	chr7:112032200-112032600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
23	chr7:112032200-112032600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:112032200-112032600	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:112032200-112032600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr7:112032200-112032600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr7:112032200-112032600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:112032200-112032600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr7:112032200-112032600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:112032200-112032600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:112032200-112032600	Flanking Active TSS	Primary T cells from cord blood	blood
32	chr7:112032200-112032600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr7:112032200-112032600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr7:112032200-112032600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr7:112032200-112032600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr7:112032200-112032600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:112032200-112032600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr7:112032200-112032600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr7:112032200-112032600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
40	chr7:112032200-112032600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:112032200-112032600	Flanking Active TSS	Liver	Liver
42	chr7:112032200-112032600	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr7:112032200-112032600	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr7:112032200-112032600	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr7:112032200-112032600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr7:112032200-112032600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr7:112032200-112032600	Enhancers	Fetal Heart	heart
48	chr7:112032200-112032600	Flanking Active TSS	Fetal Intestine Large	intestine
49	chr7:112032200-112032600	Flanking Active TSS	Fetal Intestine Small	intestine
50	chr7:112032200-112032600	Flanking Active TSS	Fetal Muscle Leg	muscle

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