Variant report

Variant	rs73717527
Chromosome Location	chr7:111953841-111953842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111947172..111951025-chr7:111951049..111954206,4	K562	blood:
2	chr7:111953427..111955871-chr7:111961966..111964536,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11976430	1.00[AFR][1000 genomes]
rs34571830	0.93[AFR][1000 genomes]
rs55731771	1.00[AFR][1000 genomes]
rs61142815	1.00[AFR][1000 genomes]
rs73715502	0.93[AFR][1000 genomes]
rs73717512	1.00[AFR][1000 genomes]
rs73717517	1.00[AFR][1000 genomes]
rs73717530	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73717532	0.93[AFR][1000 genomes]
rs73717533	0.93[AFR][1000 genomes]
rs73717535	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73717543	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
4	esv2764032	chr7:111938590-111963829	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1020212	chr7:111944370-112032596	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv5902	chr7:111952128-111997265	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111913200-111965200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:111918000-111963000	Weak transcription	Aorta	Aorta
3	chr7:111921400-111961800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:111923600-111964600	Weak transcription	Esophagus	oesophagus
5	chr7:111923600-111964800	Weak transcription	Gastric	stomach
6	chr7:111926200-111979600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr7:111926600-111982200	Weak transcription	Right Ventricle	heart
8	chr7:111926800-111962000	Weak transcription	Fetal Brain Female	brain
9	chr7:111926800-111964800	Weak transcription	Lung	lung
10	chr7:111927200-111965000	Weak transcription	Brain Anterior Caudate	brain
11	chr7:111927400-111964800	Weak transcription	Fetal Stomach	stomach
12	chr7:111928600-111978000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:111928800-111961000	Weak transcription	Placenta	Placenta
14	chr7:111929000-111958800	Weak transcription	Fetal Thymus	thymus
15	chr7:111929000-111959000	Weak transcription	Fetal Intestine Large	intestine
16	chr7:111930200-111961800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:111930600-111959000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:111930800-111965200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr7:111931000-111981000	Weak transcription	HSMMtube	muscle
20	chr7:111933000-111958600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:111934000-111965200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:111936800-111959800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:111938000-111965000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:111938400-111958400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr7:111939200-111961800	Weak transcription	Psoas Muscle	Psoas
26	chr7:111939200-111964600	Weak transcription	Left Ventricle	heart
27	chr7:111939600-111958200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:111940000-111964800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:111941000-111963200	Weak transcription	Fetal Brain Male	brain
30	chr7:111941600-111960400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr7:111943000-111960400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:111943000-111960800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:111943000-111978600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr7:111943000-111985200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:111945200-111965000	Weak transcription	Pancreas	Pancrea
36	chr7:111945200-111986800	Weak transcription	Hela-S3	cervix
37	chr7:111947200-111954200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:111947400-111981000	Weak transcription	Brain Angular Gyrus	brain
39	chr7:111947800-111955800	Weak transcription	Brain Substantia Nigra	brain
40	chr7:111947800-111960600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:111949200-111959400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr7:111950000-111956800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:111950000-111958600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:111950000-111958800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:111950000-111959200	Weak transcription	HSMM	muscle
46	chr7:111950000-111961800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr7:111950000-111961800	Weak transcription	Ovary	ovary
48	chr7:111950000-111961800	Weak transcription	HepG2	liver
49	chr7:111950000-111962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:111950200-111954000	Weak transcription	Monocytes-CD14+_RO01746	blood

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