Variant report
| Variant | rs61147726 |
|---|---|
| Chromosome Location | chr1:151437231-151437232 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:22)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:22 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 1:151411623-151426875..1:151436817-151437878 | Hela-S3 | cervix: | |
| 2 | 1:151436817-151437878..1:151496437-151509688 | Hela-S3 | cervix: | |
| 3 | chr1:151436059..151438699-chr1:151467400..151469749,2 | MCF-7 | breast: | |
| 4 | 1:151219411-151234038..1:151436817-151437878 | Hela-S3 | cervix: | |
| 5 | 1:151436817-151437878..1:151512437-151516085 | GM12878 | blood: | |
| 6 | 1:151180715-151199990..1:151436817-151437878 | Hela-S3 | cervix: | |
| 7 | chr1:151436153..151438229-chr1:151463732..151466484,2 | K562 | blood: | |
| 8 | chr1:151429172..151433890-chr1:151435781..151441025,8 | MCF-7 | breast: | |
| 9 | 1:151436817-151437878..1:151483211-151496437 | Hela-S3 | cervix: | |
| 10 | 1:151436817-151437878..1:151618750-151636526 | GM12878 | blood: | |
| 11 | 1:151270864-151283078..1:151436817-151437878 | Hela-S3 | cervix: | |
| 12 | chr1:151436182..151439012-chr1:151480953..151482703,2 | MCF-7 | breast: | |
| 13 | chr1:151431741..151434239-chr1:151435568..151437628,2 | K562 | blood: | |
| 14 | 1:151333184-151350267..1:151436817-151437878 | Hela-S3 | cervix: | |
| 15 | 1:151203965-151215310..1:151436817-151437878 | Hela-S3 | cervix: | |
| 16 | 1:151309061-151322694..1:151436817-151437878 | Hela-S3 | cervix: | |
| 17 | 1:151436817-151437878..1:151516085-151535167 | GM12878 | blood: | |
| 18 | 1:151254384-151268403..1:151436817-151437878 | Hela-S3 | cervix: | |
| 19 | chr1:151437130..151438728-chr1:151510858..151512482,2 | MCF-7 | breast: | |
| 20 | 1:151427826-151434310..1:151436817-151437878 | Hela-S3 | cervix: | |
| 21 | 1:151368336-151375897..1:151436817-151437878 | Hela-S3 | cervix: | |
| 22 | 1:151436817-151437878..1:151478607-151483211 | H1-hESC | embryonic stem cell: | embryo |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000252840 | Chromatin interaction |
| ENSG00000159352 | Chromatin interaction |
| ENSG00000143416 | Chromatin interaction |
| ENSG00000159377 | Chromatin interaction |
| ENSG00000232536 | Chromatin interaction |
| ENSG00000143390 | Chromatin interaction |
| ENSG00000143375 | Chromatin interaction |
| ENSG00000223861 | Chromatin interaction |
| ENSG00000143373 | Chromatin interaction |
| ENSG00000265753 | Chromatin interaction |
| ENSG00000143442 | Chromatin interaction |
| ENSG00000143398 | Chromatin interaction |
| ENSG00000207606 | Chromatin interaction |
| ENSG00000237976 | Chromatin interaction |
| ENSG00000232671 | Chromatin interaction |
| ENSG00000224645 | Chromatin interaction |
| ENSG00000143376 | Chromatin interaction |
| ENSG00000143367 | Chromatin interaction |
| ENSG00000143393 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs35198305 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57098736 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59506235 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59863461 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6702368 | 1.00[AMR][1000 genomes] |
| rs72996003 | 1.00[AMR][1000 genomes] |
| rs72996015 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996022 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996027 | 1.00[AMR][1000 genomes] |
| rs72996035 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996038 | 1.00[AMR][1000 genomes] |
| rs72996040 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996059 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996068 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996077 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996084 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996087 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996090 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs72996094 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7530212 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916272 | chr1:150961809-151557253 | Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 219 gene(s) | inside rSNPs | diseases |
| 2 | nsv831581 | chr1:151289151-151478605 | Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:151431000-151445000 | Weak transcription | Spleen | Spleen |
| 2 | chr1:151432400-151437800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 3 | chr1:151432600-151445000 | Weak transcription | Fetal Intestine Small | intestine |
| 4 | chr1:151432600-151445000 | Weak transcription | Pancreas | Pancrea |
