Variant report

Variant	rs72996094
Chromosome Location	chr1:151441972-151441973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs35198305	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57098736	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59506235	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59863461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61147726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6702368	1.00[AMR][1000 genomes]
rs72996003	1.00[AMR][1000 genomes]
rs72996015	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996027	1.00[AMR][1000 genomes]
rs72996035	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996038	1.00[AMR][1000 genomes]
rs72996040	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996059	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996068	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996077	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996087	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7530212	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916272	chr1:150961809-151557253	Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
2	nsv831581	chr1:151289151-151478605	Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151431000-151445000	Weak transcription	Spleen	Spleen
2	chr1:151432600-151445000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:151432600-151445000	Weak transcription	Pancreas	Pancrea
4	chr1:151438200-151442800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:151440800-151445800	Weak transcription	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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