Variant report

Variant	rs61148225
Chromosome Location	chr3:24040264-24040265
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:23961544..23965594-chr3:24039129..24042717,4	K562	blood:
2	chr3:24040169..24040769-chr3:64009018..64009689,2	MCF-7	breast:
3	chr3:24039886..24041425-chr3:24279180..24280348,12	MCF-7	breast:
4	chr3:24040089..24040604-chr3:24130148..24130919,2	K562	blood:
5	chr3:24040167..24041064-chr3:24724982..24725943,2	K562	blood:
6	chr3:24040225..24041035-chr3:24725028..24725621,3	MCF-7	breast:
7	chr3:24040049..24041089-chr3:24227019..24228043,3	MCF-7	breast:
8	chr3:24040191..24041133-chr3:24279212..24279927,3	MCF-7	breast:
9	chr3:24040191..24040792-chr3:24110416..24111055,2	MCF-7	breast:
10	chr3:24033657..24035811-chr3:24038955..24040843,2	MCF-7	breast:
11	chr3:24040156..24041043-chr3:24129982..24130913,4	MCF-7	breast:
12	chr3:23968014..23968797-chr3:24040091..24040621,2	MCF-7	breast:
13	chr3:24040099..24041130-chr3:24190239..24191261,6	MCF-7	breast:
14	chr3:24040157..24040686-chr3:24279663..24280184,2	K562	blood:
15	chr3:24033672..24036269-chr3:24038559..24040609,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163636	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59696006	1.00[AFR][1000 genomes]
rs72628111	1.00[AFR][1000 genomes]
rs73822616	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24019600-24040800	Weak transcription	NHLF	lung
2	chr3:24030800-24040400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:24033600-24040600	Weak transcription	Primary B cells from cord blood	blood
4	chr3:24033800-24040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:24034600-24040400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:24035200-24040600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:24035800-24040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:24035800-24040600	Weak transcription	Brain Angular Gyrus	brain
9	chr3:24036000-24040400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:24036000-24040400	Weak transcription	HSMMtube	muscle
11	chr3:24036000-24040400	Weak transcription	NHDF-Ad	bronchial
12	chr3:24036000-24040600	Weak transcription	Brain Germinal Matrix	brain
13	chr3:24036000-24040600	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:24036000-24040600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:24036000-24040600	Weak transcription	Brain Substantia Nigra	brain
16	chr3:24036000-24040800	Weak transcription	Ovary	ovary
17	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
18	chr3:24036200-24040400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:24036200-24040600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:24036200-24040600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:24036200-24040600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:24036200-24040600	Weak transcription	Fetal Kidney	kidney
23	chr3:24036200-24040600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:24036200-24040600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr3:24036200-24040800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr3:24036400-24040400	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:24036400-24040800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr3:24036400-24043600	Weak transcription	Aorta	Aorta
29	chr3:24038000-24040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr3:24038600-24040400	Weak transcription	Fetal Stomach	stomach
31	chr3:24038800-24040800	Weak transcription	Fetal Lung	lung
32	chr3:24039000-24040600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:24039000-24040600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:24039000-24040800	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links