Variant report

Variant	rs73822616
Chromosome Location	chr3:24023051-24023052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23958659..23961020-chr3:24021622..24024161,2	K562	blood:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59696006	0.84[AFR][1000 genomes]
rs61148225	0.84[AFR][1000 genomes]
rs72628111	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23989200-24033200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:24004000-24023400	Weak transcription	Gastric	stomach
3	chr3:24004000-24023800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr3:24005600-24032800	Weak transcription	NH-A	brain
5	chr3:24007800-24023200	Weak transcription	Colonic Mucosa	Colon
6	chr3:24010200-24023800	Weak transcription	Psoas Muscle	Psoas
7	chr3:24010200-24028800	Weak transcription	HUVEC	blood vessel
8	chr3:24010400-24024000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:24018200-24023600	Weak transcription	Lung	lung
10	chr3:24018200-24024000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:24018200-24024400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:24018200-24024600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:24018200-24033200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:24018400-24024800	Weak transcription	GM12878-XiMat	blood
15	chr3:24018400-24032200	Weak transcription	Fetal Brain Female	brain
16	chr3:24018400-24032400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:24019200-24024000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:24019400-24024000	Weak transcription	Ovary	ovary
19	chr3:24019400-24024200	Weak transcription	Brain Substantia Nigra	brain
20	chr3:24019400-24025000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr3:24019400-24025200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr3:24019400-24032800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr3:24019400-24032800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr3:24019400-24032800	Weak transcription	Primary T cells from cord blood	blood
25	chr3:24019400-24032800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:24019400-24033200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:24019400-24035400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:24019600-24023200	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr3:24019600-24024800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:24019600-24025000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr3:24019600-24025200	Weak transcription	Primary B cells from cord blood	blood
32	chr3:24019600-24025200	Weak transcription	Hela-S3	cervix
33	chr3:24019600-24027600	Weak transcription	Fetal Brain Male	brain
34	chr3:24019600-24028600	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:24019600-24040800	Weak transcription	NHLF	lung
36	chr3:24019800-24023200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:24019800-24024400	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:24019800-24024800	Weak transcription	HepG2	liver
39	chr3:24020200-24032800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr3:24020600-24023800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr3:24021200-24023200	Enhancers	HSMM	muscle
42	chr3:24021400-24032600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr3:24021400-24032800	Weak transcription	Fetal Heart	heart
44	chr3:24021600-24023800	Weak transcription	HSMMtube	muscle
45	chr3:24021600-24033200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr3:24021800-24024600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr3:24021800-24033200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:24021800-24033400	Weak transcription	NHDF-Ad	bronchial
49	chr3:24022400-24023200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr3:24022400-24023200	Strong transcription	Liver	Liver

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