Variant report

Variant	rs61152109
Chromosome Location	chr21:47300599-47300600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr21:47267781..47268663-chr21:47299803..47300649,2	MCF-7	breast:
2	chr21:46974485..46975268-chr21:47299866..47300947,3	MCF-7	breast:
3	chr21:47300298..47303074-chr21:47311902..47313864,2	K562	blood:
4	chr21:47293178..47296152-chr21:47298575..47300607,2	K562	blood:
5	chr21:47240141..47240932-chr21:47300508..47301042,2	MCF-7	breast:
6	chr21:47298754..47301234-chr21:47302328..47305027,3	K562	blood:
7	chr21:47295466..47298745-chr21:47300328..47303080,5	MCF-7	breast:
8	chr21:47280227..47282087-chr21:47299384..47301576,2	MCF-7	breast:
9	chr21:47300090..47300627-chr21:47342032..47342538,2	MCF-7	breast:
10	chr21:47300028..47300909-chr21:47342650..47343811,5	MCF-7	breast:
11	chr21:47300119..47302715-chr21:47341992..47344397,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000183570	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11908989	1.00[AMR][1000 genomes]
rs11909787	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11909949	1.00[AMR][1000 genomes]
rs11910200	1.00[AMR][1000 genomes]
rs11910469	1.00[AMR][1000 genomes]
rs11910565	1.00[AMR][1000 genomes]
rs11910741	1.00[AMR][1000 genomes]
rs11911016	1.00[AMR][1000 genomes]
rs11911051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11911110	1.00[AMR][1000 genomes]
rs11911278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11911477	1.00[AMR][1000 genomes]
rs11911528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11911547	1.00[AMR][1000 genomes]
rs11911599	1.00[AMR][1000 genomes]
rs11911859	1.00[AMR][1000 genomes]
rs28684590	1.00[AMR][1000 genomes]
rs34087732	1.00[AMR][1000 genomes]
rs57812778	1.00[AMR][1000 genomes]
rs58160661	1.00[AMR][1000 genomes]
rs58476668	1.00[AMR][1000 genomes]
rs58587005	1.00[AMR][1000 genomes]
rs59852288	1.00[AMR][1000 genomes]
rs60300060	1.00[AMR][1000 genomes]
rs61736689	1.00[AMR][1000 genomes]
rs7278814	1.00[AMR][1000 genomes]
rs73380618	1.00[AMR][1000 genomes]
rs73380620	1.00[AMR][1000 genomes]
rs73380624	1.00[AMR][1000 genomes]
rs73380625	1.00[AMR][1000 genomes]
rs73380629	1.00[AMR][1000 genomes]
rs73380634	1.00[AMR][1000 genomes]
rs73380636	1.00[AMR][1000 genomes]
rs73380639	1.00[AMR][1000 genomes]
rs73380641	1.00[AMR][1000 genomes]
rs73380652	1.00[AMR][1000 genomes]
rs73380656	1.00[AMR][1000 genomes]
rs73380658	1.00[AMR][1000 genomes]
rs73380665	1.00[AMR][1000 genomes]
rs73380670	1.00[AMR][1000 genomes]
rs73380672	1.00[AMR][1000 genomes]
rs73380673	1.00[AMR][1000 genomes]
rs73380682	1.00[AMR][1000 genomes]
rs73380688	1.00[AMR][1000 genomes]
rs73380693	1.00[AMR][1000 genomes]
rs8127953	1.00[AMR][1000 genomes]
rs8128525	1.00[AMR][1000 genomes]
rs8129516	1.00[AMR][1000 genomes]
rs8133670	1.00[AMR][1000 genomes]
rs9984190	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531546	chr21:46504151-47411772	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
2	nsv1058665	chr21:46719445-47634282	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	91 gene(s)	inside rSNPs	diseases
3	nsv544486	chr21:46719445-47634282	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	91 gene(s)	inside rSNPs	diseases
4	nsv1059230	chr21:46956877-47907990	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
5	nsv544491	chr21:46956877-47907990	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	n/a
6	nsv1058472	chr21:47027823-47797326	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
7	nsv544492	chr21:47027823-47797326	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	n/a
8	nsv428043	chr21:47179244-47471971	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	n/a
9	nsv1065959	chr21:47188878-48091343	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	n/a
10	nsv914078	chr21:47218744-47311686	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
11	nsv531580	chr21:47221774-48090317	Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	n/a
12	esv2756755	chr21:47243032-47319768	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
13	esv2758821	chr21:47243032-47319768	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
14	nsv914079	chr21:47243074-47650362	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	n/a
15	nsv914080	chr21:47265786-47311686	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv914081	chr21:47265786-47320805	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
17	nsv914082	chr21:47265786-47338007	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
18	nsv914083	chr21:47265786-47453954	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
19	nsv914084	chr21:47288453-47326666	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
20	esv14817	chr21:47293464-47303825	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv918103	chr21:47297067-48089510	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	n/a
22	nsv869002	chr21:47297268-47963186	Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:47266800-47300600	Weak transcription	Right Atrium	heart
2	chr21:47295600-47309200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr21:47298000-47306600	Weak transcription	NH-A	brain
4	chr21:47299200-47301800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr21:47299400-47301600	Enhancers	Primary T cells from cord blood	blood
6	chr21:47299600-47301400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr21:47299600-47301600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr21:47299600-47302000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr21:47299600-47302600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr21:47299600-47303000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr21:47299800-47300600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr21:47299800-47300800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr21:47299800-47300800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr21:47299800-47301000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr21:47299800-47301000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr21:47299800-47301000	Enhancers	Brain Hippocampus Middle	brain
17	chr21:47299800-47301000	Enhancers	Brain Substantia Nigra	brain
18	chr21:47299800-47301000	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr21:47299800-47301200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr21:47299800-47301200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr21:47299800-47301200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr21:47299800-47301200	Enhancers	HSMM	muscle
23	chr21:47299800-47301600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr21:47299800-47301600	Enhancers	Fetal Thymus	thymus
25	chr21:47299800-47302000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr21:47300000-47300600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr21:47300000-47300600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr21:47300000-47300800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr21:47300000-47300800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr21:47300000-47301000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr21:47300000-47301000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr21:47300000-47301000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr21:47300000-47301000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr21:47300000-47301000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr21:47300000-47301000	Enhancers	Adipose Nuclei	Adipose
36	chr21:47300000-47301000	Enhancers	Brain Anterior Caudate	brain
37	chr21:47300000-47301000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr21:47300000-47301000	Enhancers	Spleen	Spleen
39	chr21:47300000-47301000	Enhancers	HSMMtube	muscle
40	chr21:47300000-47301000	Enhancers	NHDF-Ad	bronchial
41	chr21:47300000-47301200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr21:47300000-47301400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr21:47300000-47302200	Enhancers	Brain Cingulate Gyrus	brain
44	chr21:47300200-47300600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr21:47300200-47300600	Enhancers	Placenta	Placenta
46	chr21:47300200-47300600	Enhancers	Pancreas	Pancrea
47	chr21:47300200-47300600	Enhancers	A549	lung
48	chr21:47300200-47300800	Flanking Active TSS	Brain Angular Gyrus	brain
49	chr21:47300200-47300800	Enhancers	Right Ventricle	heart
50	chr21:47300200-47300800	Enhancers	Sigmoid Colon	Sigmoid Colon

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