Variant report

Variant	rs61165632
Chromosome Location	chr5:74592089-74592090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11948624	0.86[AMR][1000 genomes]
rs11955819	0.88[EUR][1000 genomes]
rs34711940	0.88[EUR][1000 genomes]
rs4640773	0.82[EUR][1000 genomes]
rs57414757	0.88[EUR][1000 genomes]
rs58216239	0.88[EUR][1000 genomes]
rs59427628	0.88[EUR][1000 genomes]
rs60630022	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61529616	0.87[EUR][1000 genomes]
rs6865606	0.88[EUR][1000 genomes]
rs73118846	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118860	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118876	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73118877	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73118880	0.81[EUR][1000 genomes]
rs73120804	0.88[EUR][1000 genomes]
rs73120805	0.88[EUR][1000 genomes]
rs73120807	0.88[EUR][1000 genomes]
rs73120811	0.88[EUR][1000 genomes]
rs73120822	0.88[EUR][1000 genomes]
rs73120824	0.88[EUR][1000 genomes]
rs7706799	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74588800-74592200	Weak transcription	Liver	Liver
2	chr5:74592000-74592600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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