Variant report

Variant	rs73118877
Chromosome Location	chr5:74613740-74613741
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11955819	0.81[EUR][1000 genomes]
rs57414757	0.81[EUR][1000 genomes]
rs58216239	0.81[EUR][1000 genomes]
rs59427628	0.81[EUR][1000 genomes]
rs60630022	0.81[EUR][1000 genomes]
rs61165632	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61529616	0.80[EUR][1000 genomes]
rs6865606	0.81[EUR][1000 genomes]
rs73118846	0.81[EUR][1000 genomes]
rs73118860	0.81[EUR][1000 genomes]
rs73118876	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73118880	0.83[AMR][1000 genomes]
rs73120804	0.81[EUR][1000 genomes]
rs73120805	0.81[EUR][1000 genomes]
rs73120807	0.81[EUR][1000 genomes]
rs73120811	0.81[EUR][1000 genomes]
rs73120822	0.81[EUR][1000 genomes]
rs73120824	0.81[EUR][1000 genomes]
rs7706799	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74607800-74615800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:74612800-74614800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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