Variant report

Variant	rs61174206
Chromosome Location	chr14:64696200-64696201
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64694405..64698467-chr14:64698699..64701055,4	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10142498	0.87[ASN][1000 genomes]
rs10144225	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1109056	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101732	1.00[ASN][1000 genomes]
rs17225885	0.91[ASN][1000 genomes]
rs2274705	0.91[ASN][1000 genomes]
rs28418648	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28458963	0.93[ASN][1000 genomes]
rs68183024	0.89[ASN][1000 genomes]
rs7157428	0.91[ASN][1000 genomes]
rs72720398	1.00[ASN][1000 genomes]
rs8003034	0.98[ASN][1000 genomes]
rs8003490	0.93[ASN][1000 genomes]
rs8017441	0.91[ASN][1000 genomes]
rs8018687	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8020646	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs944045	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1050378	chr14:64686543-64703012	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:131 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64664000-64699600	Weak transcription	Small Intestine	intestine
2	chr14:64664200-64698600	Weak transcription	HMEC	breast
3	chr14:64665400-64700200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr14:64666800-64699400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:64672800-64696600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr14:64674600-64696200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr14:64674600-64696400	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr14:64674600-64699800	Strong transcription	Liver	Liver
9	chr14:64674800-64696200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:64674800-64696200	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr14:64674800-64696200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr14:64674800-64696400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr14:64674800-64696400	Strong transcription	Dnd41	blood
14	chr14:64674800-64696800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:64674800-64697600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:64674800-64698400	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:64674800-64699000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr14:64674800-64700000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr14:64674800-64700600	Strong transcription	Fetal Intestine Large	intestine
20	chr14:64675000-64696400	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:64675000-64696400	Strong transcription	Brain Germinal Matrix	brain
22	chr14:64675200-64696400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr14:64675400-64696200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr14:64676600-64696200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr14:64676800-64698800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:64677000-64698600	Weak transcription	NHLF	lung
27	chr14:64677000-64698800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr14:64677000-64699400	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:64677200-64698600	Weak transcription	NHDF-Ad	bronchial
30	chr14:64677400-64697800	Strong transcription	Fetal Stomach	stomach
31	chr14:64677600-64698200	Strong transcription	Colonic Mucosa	Colon
32	chr14:64679800-64698200	Weak transcription	HUVEC	blood vessel
33	chr14:64679800-64698800	Weak transcription	NH-A	brain
34	chr14:64681600-64698800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr14:64684400-64696800	Strong transcription	Adipose Nuclei	Adipose
36	chr14:64684400-64699600	Strong transcription	Placenta	Placenta
37	chr14:64684600-64696600	Strong transcription	Fetal Brain Female	brain
38	chr14:64684600-64696800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr14:64685800-64696200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr14:64686000-64696200	Strong transcription	Lung	lung
41	chr14:64687800-64698200	Weak transcription	HSMM	muscle
42	chr14:64688000-64696200	Strong transcription	Spleen	Spleen
43	chr14:64688400-64696400	Strong transcription	Thymus	Thymus
44	chr14:64688400-64697200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr14:64688600-64699600	Weak transcription	Right Atrium	heart
46	chr14:64688600-64700000	Strong transcription	Fetal Muscle Leg	muscle
47	chr14:64688600-64700200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr14:64688800-64699800	Weak transcription	Brain Substantia Nigra	brain
49	chr14:64688800-64710600	Weak transcription	Fetal Heart	heart
50	chr14:64689200-64705400	Weak transcription	Primary hematopoietic stem cells	blood

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