Variant report

Variant	rs8017441
Chromosome Location	chr14:64715794-64715795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64714422..64716137-chr17:57919918..57922664,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10142498	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10144225	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[MKK][hapmap];0.96[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10459452	0.85[CHB][hapmap]
rs1109056	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1256062	0.91[CEU][hapmap];0.94[GIH][hapmap]
rs1256064	0.81[GIH][hapmap]
rs17101732	0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17225885	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17226088	1.00[CHB][hapmap]
rs1952585	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs2274705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28418648	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs28458963	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61174206	0.91[ASN][1000 genomes]
rs68183024	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7157428	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72720398	0.91[ASN][1000 genomes]
rs8003034	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8003490	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.93[ASN][1000 genomes]
rs8018687	0.86[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs8020646	0.86[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];0.81[ASN][1000 genomes]
rs944045	1.00[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv902021	chr14:64647646-64715794	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64698800-64716600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:64703200-64716800	Weak transcription	Brain Germinal Matrix	brain
3	chr14:64713000-64723800	Weak transcription	Thymus	Thymus
4	chr14:64714600-64716000	Enhancers	Ovary	ovary
5	chr14:64715400-64715800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:64715400-64715800	Enhancers	Fetal Stomach	stomach
7	chr14:64715400-64716200	Enhancers	Fetal Lung	lung
8	chr14:64715400-64716400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr14:64715400-64717600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:64715600-64715800	Weak transcription	Pancreas	Pancrea
11	chr14:64715600-64718600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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