Variant report

Variant	rs61189672
Chromosome Location	chr3:195854790-195854791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:195805159..195810209-chr3:195847550..195859709,26	K562	blood:
2	chr3:195854380..195857032-chr3:195859658..195863417,5	K562	blood:
3	chr3:195852756..195855361-chr3:195857407..195859337,4	K562	blood:
4	chr3:195845862..195855651-chr3:195867758..195873687,15	K562	blood:
5	chr3:195854158..195855690-chr3:195863445..195865120,2	MCF-7	breast:
6	chr3:195854603..195857572-chr3:195905057..195907261,2	K562	blood:
7	chr3:195833897..195835594-chr3:195854209..195856917,2	K562	blood:
8	chr3:195853800..195856290-chr3:195863530..195866290,3	K562	blood:
9	chr3:195853339..195855440-chr3:195917765..195919794,2	K562	blood:
10	chr3:195822314..195824985-chr3:195853496..195856362,2	K562	blood:
11	chr3:195854415..195856195-chr3:195888995..195891354,2	K562	blood:
12	chr3:195847228..195849755-chr3:195852083..195855531,3	K562	blood:
13	chr3:195853861..195857068-chr3:195857159..195859761,4	K562	blood:
14	chr3:195806118..195810262-chr3:195854695..195858790,4	K562	blood:
15	chr3:195807541..195810380-chr3:195852978..195856853,4	MCF-7	breast:
16	chr3:195806486..195808572-chr3:195852578..195854905,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000224652	Chromatin interaction
ENSG00000072274	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6771694	1.00[AMR][1000 genomes]
rs6788312	1.00[AMR][1000 genomes]
rs6805212	1.00[AMR][1000 genomes]
rs73074930	1.00[EUR][1000 genomes]
rs73076369	1.00[AMR][1000 genomes]
rs73076371	1.00[AMR][1000 genomes]
rs73076377	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2759213	chr3:195102787-196071593	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2757913	chr3:195379484-196071593	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv532213	chr3:195643944-196063636	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv997797	chr3:195658360-196212958	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	nsv878170	chr3:195677895-195871388	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv878171	chr3:195677895-195959924	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
7	nsv1008512	chr3:195709662-195974936	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
8	nsv1002584	chr3:195734933-195910772	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
9	nsv432543	chr3:195746690-196015690	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
10	nsv532214	chr3:195762648-195916068	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv1002065	chr3:195769609-195877692	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	nsv1009105	chr3:195769609-195984388	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
13	nsv461130	chr3:195776240-195907653	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
14	nsv593069	chr3:195776240-195907653	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
15	nsv1005558	chr3:195789462-195919077	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
16	nsv536890	chr3:195789462-195919077	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv998042	chr3:195840858-195934070	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
18	nsv878173	chr3:195848264-195889626	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	nsv1009811	chr3:195851796-196138071	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
20	nsv593070	chr3:195854279-195924203	Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:195848600-195861400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:195853200-195855600	Enhancers	Primary T cells fromperipheralblood	blood
3	chr3:195853200-195855600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:195853200-195855600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:195853200-195856200	Enhancers	Placenta	Placenta
6	chr3:195853400-195854800	Enhancers	Lung	lung
7	chr3:195853400-195854800	Enhancers	HMEC	breast
8	chr3:195853400-195855000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:195853400-195855200	Enhancers	Primary B cells from peripheral blood	blood
10	chr3:195853400-195855200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:195853400-195855600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:195853600-195854800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:195853600-195855000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr3:195853800-195854800	Enhancers	Primary T cells from cord blood	blood
15	chr3:195853800-195854800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr3:195853800-195854800	Enhancers	Duodenum Mucosa	Duodenum
17	chr3:195853800-195854800	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr3:195853800-195855000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:195853800-195855000	Enhancers	Fetal Intestine Large	intestine
20	chr3:195853800-195855000	Enhancers	Stomach Mucosa	stomach
21	chr3:195853800-195855200	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr3:195853800-195855200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr3:195853800-195855200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr3:195853800-195855200	Flanking Active TSS	K562	blood
25	chr3:195853800-195855400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr3:195853800-195855600	Enhancers	Fetal Thymus	thymus
27	chr3:195853800-195856000	Enhancers	Primary hematopoietic stem cells	blood
28	chr3:195854000-195854800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:195854000-195854800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:195854000-195854800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:195854000-195854800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr3:195854000-195854800	Flanking Active TSS	Hela-S3	cervix
33	chr3:195854000-195855000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr3:195854000-195855000	Enhancers	Fetal Intestine Small	intestine
35	chr3:195854000-195855000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr3:195854000-195855600	Enhancers	Esophagus	oesophagus
37	chr3:195854200-195854800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr3:195854200-195854800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:195854200-195854800	Enhancers	Primary B cells from cord blood	blood
40	chr3:195854200-195854800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr3:195854200-195854800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:195854200-195854800	Enhancers	Colonic Mucosa	Colon
43	chr3:195854200-195854800	Enhancers	Gastric	stomach
44	chr3:195854200-195854800	Enhancers	Ovary	ovary
45	chr3:195854200-195854800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr3:195854400-195854800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:195854400-195854800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr3:195854400-195854800	Enhancers	Dnd41	blood
49	chr3:195854400-195854800	Flanking Active TSS	GM12878-XiMat	blood
50	chr3:195854400-195855000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links