Variant report

Variant	rs61197433
Chromosome Location	chr15:82274200-82274201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs59819892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60478104	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7179922	0.80[AFR][1000 genomes]
rs72747943	0.86[AFR][1000 genomes]
rs74028453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74028459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427964	chr15:81941520-82293593	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82273800-82274600	Enhancers	Fetal Brain Male	brain
2	chr15:82273800-82274800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:82273800-82287400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:82274000-82274200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:82274000-82274600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:82274000-82274600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:82274000-82274600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr15:82274000-82274600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:82274000-82274600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:82274000-82274600	Enhancers	Brain Germinal Matrix	brain
11	chr15:82274000-82274600	Enhancers	Fetal Stomach	stomach
12	chr15:82274000-82274800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:82274200-82274600	Enhancers	Fetal Lung	lung
14	chr15:82274200-82274800	Enhancers	Brain Anterior Caudate	brain
15	chr15:82274200-82274800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:82274200-82287400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links