Variant report

Variant	rs7179922
Chromosome Location	chr15:82328894-82328895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82326076..82329021-chr15:82329177..82330858,2	K562	blood:
2	chr15:82328700..82330295-chr15:82332113..82333993,2	MCF-7	breast:
3	chr15:82328020..82329599-chr15:82331428..82334230,2	K562	blood:
4	chr15:82314542..82317074-chr15:82326338..82329168,2	MCF-7	breast:
5	chr15:82328461..82330236-chr15:82337262..82339517,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MEX3B-1	chr15:82328802-82329178	NONHSAT047762

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56339043	0.90[AFR][1000 genomes]
rs59819892	0.80[AFR][1000 genomes]
rs61197433	0.80[AFR][1000 genomes]
rs74028453	0.80[AFR][1000 genomes]
rs74028459	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
2	chr15:82324000-82333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:82325000-82331600	Weak transcription	K562	blood
4	chr15:82325000-82332600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:82326600-82332400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:82327200-82332800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:82327400-82335000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:82327600-82334400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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