Variant report

Variant	rs61233503
Chromosome Location	chr1:92059226-92059227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:92056853..92058906-chr1:92058997..92061738,3	K562	blood:
2	chr1:92038932..92042320-chr1:92059008..92062228,3	K562	blood:
3	chr1:92053069..92056017-chr1:92057570..92059877,2	K562	blood:
4	chr1:92057409..92061312-chr1:92170673..92173610,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12024768	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12025820	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12028000	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12028689	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12028899	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12029135	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12031250	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17131499	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72712437	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92049600-92061600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:92051600-92060000	Weak transcription	Lung	lung
3	chr1:92051800-92067600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:92055000-92060800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr1:92055400-92061200	Enhancers	Ovary	ovary
6	chr1:92055600-92061400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:92055800-92076400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:92056000-92062200	Enhancers	Fetal Heart	heart
9	chr1:92056800-92060000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:92057200-92060000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:92057200-92060200	Weak transcription	Pancreas	Pancrea
12	chr1:92057200-92070400	Weak transcription	Psoas Muscle	Psoas
13	chr1:92057400-92060600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:92057600-92060000	Weak transcription	Colon Smooth Muscle	Colon
15	chr1:92057600-92061600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr1:92057600-92063400	Enhancers	K562	blood
17	chr1:92057800-92060000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr1:92057800-92061600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:92058400-92061800	Enhancers	Placenta	Placenta
20	chr1:92058600-92059600	Enhancers	Fetal Stomach	stomach
21	chr1:92058600-92060000	Weak transcription	Left Ventricle	heart
22	chr1:92058600-92060000	Weak transcription	Right Atrium	heart
23	chr1:92058600-92060000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:92058800-92060000	Weak transcription	Right Ventricle	heart
25	chr1:92058800-92061400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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