Variant report

Variant	rs61241902
Chromosome Location	chr1:155950261-155950262
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr1:155949784-155950339	PBDE	blood:	n/a	n/a
2	GTF2F1	chr1:155949854-155950434	Hela-S3	cervix:	n/a	n/a
3	MAX	chr1:155949801-155950359	K562	blood:	n/a	n/a
4	POLR2A	chr1:155946371-155950507	HCT-116	colon:	n/a	n/a
5	POLR2A	chr1:155943832-155953868	U87	brain:	n/a	n/a
6	RCOR1	chr1:155949746-155950271	K562	blood:	n/a	n/a
7	POLR2A	chr1:155943838-155953803	U87	brain:	n/a	n/a
8	POLR2A	chr1:155945892-155950398	GM12891	blood:	n/a	n/a
9	POLR2A	chr1:155948130-155950297	K562	blood:	n/a	n/a
10	MTA3	chr1:155943968-155951505	GM12878	blood:	n/a	n/a
11	ARID3A	chr1:155950142-155950363	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:155949796..155952552-chr1:155965879..155967934,2	K562	blood:
2	chr1:155902613..155905963-chr1:155944776..155950602,8	MCF-7	breast:
3	chr1:155948977..155951151-chr1:156030667..156033085,2	MCF-7	breast:
4	chr1:155950120..155952979-chr1:155958659..155960615,3	MCF-7	breast:
5	chr1:155943579..155945946-chr1:155950039..155953037,2	MCF-7	breast:
6	chr1:155902096..155906333-chr1:155944635..155950706,8	K562	blood:
7	chr1:155949794..155952659-chr1:155990728..155992643,2	K562	blood:
8	chr1:155931521..155933487-chr1:155948963..155950972,2	MCF-7	breast:
9	chr1:155949831..155952126-chr1:156022990..156025068,2	K562	blood:
10	chr1:155907837..155914260-chr1:155947632..155952579,11	MCF-7	breast:
11	chr1:155902760..155905677-chr1:155945999..155951456,7	K562	blood:
12	chr1:155950118..155953012-chr1:155973513..155975361,2	K562	blood:
13	chr1:155906141..155908097-chr1:155950003..155952687,2	K562	blood:

No data

Variant related genes	Relation type
ARHGEF2	TF binding region
ENSG00000132698	Chromatin interaction
ENSG00000116584	Chromatin interaction
ENSG00000160803	Chromatin interaction
ENSG00000163479	Chromatin interaction
ENSG00000116586	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000173080	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16837089	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155943600-155951400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:155945200-155950800	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr1:155948400-155950400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:155948400-155950400	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr1:155948600-155950400	Flanking Active TSS	Duodenum Mucosa	Duodenum
6	chr1:155948600-155950400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr1:155948600-155950600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr1:155948600-155950600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:155948600-155951600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr1:155948600-155951600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
11	chr1:155948600-155951800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
12	chr1:155948600-155952000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:155948600-155952200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:155948600-155952200	Flanking Active TSS	Hela-S3	cervix
15	chr1:155948600-155953800	Flanking Active TSS	NHEK	skin
16	chr1:155948800-155950400	Flanking Active TSS	Rectal Smooth Muscle	rectum
17	chr1:155948800-155950400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr1:155948800-155951600	Flanking Active TSS	Primary B cells from peripheral blood	blood
19	chr1:155948800-155951800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr1:155948800-155953200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr1:155949000-155951400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr1:155949000-155951400	Enhancers	Spleen	Spleen
23	chr1:155949000-155951600	Enhancers	Placenta Amnion	Placenta Amnion
24	chr1:155949000-155951800	Enhancers	Liver	Liver
25	chr1:155949000-155952000	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:155949000-155952000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr1:155949000-155952600	Flanking Active TSS	HSMMtube	muscle
28	chr1:155949000-155953400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:155949000-155953800	Weak transcription	Pancreas	Pancrea
30	chr1:155949200-155950400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr1:155949200-155950400	Enhancers	Gastric	stomach
32	chr1:155949200-155950600	Enhancers	Brain Angular Gyrus	brain
33	chr1:155949200-155951600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr1:155949200-155952000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:155949200-155952000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr1:155949200-155953400	Weak transcription	Brain Germinal Matrix	brain
37	chr1:155949200-155953800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr1:155949400-155950400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr1:155949400-155950800	Weak transcription	Aorta	Aorta
40	chr1:155949400-155950800	Enhancers	Brain Cingulate Gyrus	brain
41	chr1:155949400-155951400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:155949400-155951600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr1:155949400-155951800	Enhancers	Brain Substantia Nigra	brain
44	chr1:155949400-155951800	Enhancers	Stomach Mucosa	stomach
45	chr1:155949400-155952000	Enhancers	Fetal Kidney	kidney
46	chr1:155949400-155953000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr1:155949400-155953000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:155949400-155953400	Flanking Active TSS	NHLF	lung
49	chr1:155949400-155953800	Enhancers	HUVEC	blood vessel
50	chr1:155949600-155951000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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