Variant report

Variant	rs16837089
Chromosome Location	chr1:155867999-155868000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155867256..155868784-chr1:155879441..155881397,2	MCF-7	breast:
2	chr1:155867912..155870035-chr1:155901308..155904265,2	K562	blood:
3	chr1:155861959..155864880-chr1:155867631..155869161,2	MCF-7	breast:
4	chr1:155867375..155873348-chr1:155878269..155881617,9	K562	blood:

Variant related genes	Relation type
ENSG00000143622	Chromatin interaction
ENSG00000132680	Chromatin interaction
ENSG00000201614	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11264418	1.00[LWK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080245	0.90[YRI][hapmap]
rs16837075	0.92[YRI][hapmap];1.00[AMR][1000 genomes]
rs1804478	0.86[LWK][hapmap];0.90[YRI][hapmap]
rs41409345	0.86[LWK][hapmap];1.00[MKK][hapmap]
rs61241902	0.92[AFR][1000 genomes]
rs6692929	0.86[LWK][hapmap];1.00[MKK][hapmap]
rs822517	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155830000-155869000	Weak transcription	Gastric	stomach
2	chr1:155841800-155869200	Weak transcription	Right Ventricle	heart
3	chr1:155844400-155874000	Weak transcription	Fetal Brain Male	brain
4	chr1:155850600-155873600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:155851600-155870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr1:155854200-155868600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:155854400-155873600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:155854800-155868800	Weak transcription	Ovary	ovary
9	chr1:155862800-155873600	Weak transcription	Psoas Muscle	Psoas
10	chr1:155863000-155869600	Weak transcription	Fetal Heart	heart
11	chr1:155863200-155870000	Weak transcription	Colonic Mucosa	Colon
12	chr1:155863400-155868800	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:155863400-155868800	Weak transcription	Left Ventricle	heart
14	chr1:155863400-155873600	Weak transcription	Stomach Mucosa	stomach
15	chr1:155863400-155880200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:155863600-155868400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:155863800-155868800	Weak transcription	Brain Substantia Nigra	brain
18	chr1:155863800-155874000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr1:155864000-155868400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:155864000-155868800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr1:155864000-155868800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr1:155864000-155868800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:155864000-155868800	Weak transcription	Fetal Kidney	kidney
24	chr1:155864000-155868800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:155864000-155868800	Weak transcription	Small Intestine	intestine
26	chr1:155864000-155869000	Weak transcription	Aorta	Aorta
27	chr1:155864000-155869000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:155864200-155868400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr1:155864200-155868400	Weak transcription	Brain Germinal Matrix	brain
30	chr1:155864200-155868600	Weak transcription	HMEC	breast
31	chr1:155864200-155868800	Weak transcription	Hela-S3	cervix
32	chr1:155864200-155869000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr1:155864200-155869000	Weak transcription	HepG2	liver
34	chr1:155864200-155869000	Weak transcription	HSMMtube	muscle
35	chr1:155864800-155868800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr1:155865000-155875400	Strong transcription	Fetal Brain Female	brain
37	chr1:155865200-155871200	Strong transcription	HSMM	muscle
38	chr1:155865200-155878600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:155865200-155879200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr1:155865200-155879600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr1:155865400-155868400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:155865400-155868800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr1:155865400-155868800	Strong transcription	Brain Hippocampus Middle	brain
44	chr1:155865400-155872000	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr1:155865400-155873600	Strong transcription	Placenta	Placenta
46	chr1:155865600-155879200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:155865600-155879600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:155865800-155878400	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr1:155865800-155878800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:155865800-155879200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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