Variant report

Variant	rs61247604
Chromosome Location	chr11:119522999-119523000
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119498849..119500765-chr11:119521663..119523665,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58142644	1.00[ASN][1000 genomes]
rs59781657	1.00[ASN][1000 genomes]
rs60008550	0.92[ASN][1000 genomes]
rs61030138	0.92[ASN][1000 genomes]
rs61122873	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv3472541	chr11:119519910-119523381	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3472552	chr11:119519910-119523381	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119520400-119523000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:119520600-119523400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:119521000-119523000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:119521000-119523000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:119521200-119523000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:119521200-119523200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119521800-119523200	Enhancers	Pancreas	Pancrea
8	chr11:119522000-119523000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr11:119522200-119523200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr11:119522400-119523000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:119522400-119523200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:119522400-119523200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:119522400-119523200	Enhancers	Left Ventricle	heart
14	chr11:119522400-119523200	Enhancers	Spleen	Spleen
15	chr11:119522400-119523200	Enhancers	HepG2	liver
16	chr11:119522400-119523400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:119522600-119523000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:119522600-119523000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr11:119522600-119523200	Enhancers	Right Ventricle	heart
20	chr11:119522600-119523400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr11:119522600-119523600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:119522600-119523600	Enhancers	Fetal Muscle Leg	muscle
23	chr11:119522600-119524000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:119522600-119524000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr11:119522800-119523000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr11:119522800-119523200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr11:119522800-119523200	Enhancers	Placenta	Placenta
28	chr11:119522800-119523600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:119522800-119523600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:119522800-119524000	Enhancers	HSMM	muscle
31	chr11:119522800-119532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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