Variant report

Variant	rs59781657
Chromosome Location	chr11:119523440-119523441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11604218	1.00[EUR][1000 genomes]
rs3751021	1.00[AMR][1000 genomes]
rs58142644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59270995	1.00[AMR][1000 genomes]
rs59444734	1.00[AMR][1000 genomes]
rs60008550	0.92[ASN][1000 genomes]
rs60023994	1.00[AMR][1000 genomes]
rs61030138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61122873	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61247604	1.00[ASN][1000 genomes]
rs73571253	1.00[AMR][1000 genomes]
rs73572185	1.00[AMR][1000 genomes]
rs73572202	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042460	chr11:119430954-119540452	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv898420	chr11:119488646-119541332	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv898421	chr11:119499014-119631325	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv984471	chr11:119505802-119568473	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv898422	chr11:119518006-119601779	Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119522600-119523600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:119522600-119523600	Enhancers	Fetal Muscle Leg	muscle
3	chr11:119522600-119524000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:119522600-119524000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr11:119522800-119523600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr11:119522800-119523600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:119522800-119524000	Enhancers	HSMM	muscle
8	chr11:119522800-119532400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:119523000-119523800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:119523000-119524200	Enhancers	HSMMtube	muscle
11	chr11:119523000-119529800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:119523000-119532000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:119523200-119531200	Weak transcription	Pancreas	Pancrea
14	chr11:119523200-119534200	Weak transcription	Spleen	Spleen
15	chr11:119523200-119541800	Weak transcription	Left Ventricle	heart
16	chr11:119523400-119523600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr11:119523400-119523800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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