Variant report

Variant	rs73572185
Chromosome Location	chr11:119355854-119355855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs3751021	1.00[AMR][1000 genomes]
rs58142644	1.00[AMR][1000 genomes]
rs59270995	1.00[AMR][1000 genomes]
rs59444734	1.00[AMR][1000 genomes]
rs59781657	1.00[AMR][1000 genomes]
rs60023994	1.00[AMR][1000 genomes]
rs61030138	1.00[AMR][1000 genomes]
rs61122873	1.00[AMR][1000 genomes]
rs73571253	1.00[AMR][1000 genomes]
rs73572202	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832284	chr11:119237650-119408625	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1054222	chr11:119295063-119406369	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv1831688	chr11:119346590-119387267	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119337800-119359600	Weak transcription	Right Atrium	heart
2	chr11:119352600-119367000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:119355000-119356400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:119355000-119359000	Weak transcription	Brain Germinal Matrix	brain
5	chr11:119355400-119356400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:119355600-119356200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:119355800-119356200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:119355800-119356400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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