Variant report

Variant	rs61265671
Chromosome Location	chr2:40042211-40042212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1003448	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10174172	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10208971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10865156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12712657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12712658	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1861257	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2110668	1.00[AMR][1000 genomes]
rs2110669	1.00[AMR][1000 genomes]
rs2192709	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2373697	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4670965	1.00[AMR][1000 genomes]
rs57881063	1.00[AMR][1000 genomes]
rs60034070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61688062	1.00[AMR][1000 genomes]
rs6544250	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6707373	1.00[AMR][1000 genomes]
rs6708625	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73924963	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73925000	1.00[AMR][1000 genomes]
rs7572478	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7601124	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833881	chr2:39914558-40067256	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1003593	chr2:40009597-40165666	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535651	chr2:40009597-40165666	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40040800-40045800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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