Variant report

Variant	rs73925000
Chromosome Location	chr2:40066372-40066373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1003448	1.00[AMR][1000 genomes]
rs10174172	1.00[AMR][1000 genomes]
rs10208971	1.00[AMR][1000 genomes]
rs10865156	1.00[AMR][1000 genomes]
rs12712657	1.00[AMR][1000 genomes]
rs12712658	1.00[AMR][1000 genomes]
rs1861257	1.00[AMR][1000 genomes]
rs2110668	1.00[AMR][1000 genomes]
rs2110669	1.00[AMR][1000 genomes]
rs2192709	1.00[AMR][1000 genomes]
rs2373697	1.00[AMR][1000 genomes]
rs4670965	1.00[AMR][1000 genomes]
rs57881063	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60034070	1.00[AMR][1000 genomes]
rs61265671	1.00[AMR][1000 genomes]
rs61688062	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6544250	1.00[AMR][1000 genomes]
rs6707373	1.00[AMR][1000 genomes]
rs6708625	1.00[AMR][1000 genomes]
rs73924963	1.00[AMR][1000 genomes]
rs7572478	1.00[AMR][1000 genomes]
rs7601124	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833881	chr2:39914558-40067256	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1003593	chr2:40009597-40165666	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535651	chr2:40009597-40165666	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv873891	chr2:40046658-40173905	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40065200-40066400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:40065200-40067200	Enhancers	Fetal Thymus	thymus
3	chr2:40065400-40066600	Enhancers	Esophagus	oesophagus
4	chr2:40065600-40067200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:40066200-40066400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:40066200-40067000	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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