Variant report

Variant	rs61271315
Chromosome Location	chr18:29679560-29679561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29671748..29674705-chr18:29679109..29681037,2	MCF-7	breast:
2	chr18:29677377..29681802-chr18:29685425..29688339,4	K562	blood:
3	chr18:29671668..29674783-chr18:29677807..29681561,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265008	Chromatin interaction
ENSG00000134758	Chromatin interaction
ENSG00000238982	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16962701	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4799327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4799328	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4799630	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55786778	0.82[ASN][1000 genomes]
rs56273402	0.86[ASN][1000 genomes]
rs56360277	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs67074695	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs68037424	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7229437	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7230167	0.82[ASN][1000 genomes]
rs7234604	0.84[ASN][1000 genomes]
rs7237971	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73415858	0.90[ASN][1000 genomes]
rs73415859	0.88[ASN][1000 genomes]
rs73415860	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909523	chr18:29645496-29679922	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29673400-29692800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:29673400-29713800	Weak transcription	Spleen	Spleen
3	chr18:29673800-29702000	Weak transcription	Pancreas	Pancrea
4	chr18:29673800-29714000	Weak transcription	Esophagus	oesophagus
5	chr18:29673800-29714200	Weak transcription	Ovary	ovary
6	chr18:29673800-29715200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:29673800-29715200	Weak transcription	Lung	lung
8	chr18:29673800-29715800	Weak transcription	Colonic Mucosa	Colon
9	chr18:29673800-29717000	Weak transcription	HSMMtube	muscle
10	chr18:29674000-29679600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr18:29674000-29689200	Weak transcription	Right Atrium	heart
12	chr18:29674000-29692600	Weak transcription	Placenta	Placenta
13	chr18:29674000-29712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr18:29674200-29692800	Weak transcription	HSMM	muscle
15	chr18:29674200-29693000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr18:29674600-29680800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:29674600-29695600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr18:29674600-29703000	Weak transcription	Osteobl	bone
19	chr18:29674600-29705600	Weak transcription	NHLF	lung
20	chr18:29674800-29689200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr18:29675000-29680800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr18:29675000-29692200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr18:29675000-29694600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr18:29675000-29717200	Weak transcription	NH-A	brain
25	chr18:29675200-29680000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr18:29675200-29692800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr18:29675400-29681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:29675400-29681600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr18:29675400-29689200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr18:29675400-29693200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr18:29675400-29693200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr18:29675600-29691000	Weak transcription	HUVEC	blood vessel
33	chr18:29675600-29691800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr18:29675800-29692000	Weak transcription	HMEC	breast
35	chr18:29676000-29679600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr18:29676000-29679600	Weak transcription	A549	lung
37	chr18:29676000-29681600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr18:29676000-29693000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr18:29676200-29692000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr18:29676200-29697200	Weak transcription	NHDF-Ad	bronchial
41	chr18:29676400-29691800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr18:29676400-29692200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr18:29676400-29693200	Weak transcription	Fetal Lung	lung
44	chr18:29676400-29707000	Weak transcription	Brain Angular Gyrus	brain
45	chr18:29676600-29679600	Enhancers	Primary T cells fromperipheralblood	blood
46	chr18:29676600-29684400	Weak transcription	Brain Substantia Nigra	brain
47	chr18:29676600-29692200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr18:29676600-29692200	Weak transcription	NHEK	skin
49	chr18:29676600-29704800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr18:29676800-29681800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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