Variant report

Variant	rs61275289
Chromosome Location	chr6:27744626-27744627
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27461978..27463563-chr6:27744301..27746788,2	K562	blood:
2	chr6:27738868..27742221-chr6:27743370..27745719,4	MCF-7	breast:
3	chr6:27744586..27748272-chr6:27756903..27759108,3	MCF-7	breast:
4	chr6:27519208..27521842-chr6:27743894..27746094,2	K562	blood:
5	chr6:27483274..27486299-chr6:27743798..27746075,3	K562	blood:
6	chr6:27461978..27464683-chr6:27744618..27746788,2	K562	blood:
7	chr6:27114542..27117845-chr6:27741589..27745932,6	K562	blood:
8	chr6:27100048..27102591-chr6:27743747..27745721,2	K562	blood:
9	chr6:27100313..27102591-chr6:27743747..27746593,3	K562	blood:
10	chr6:27113969..27118292-chr6:27739764..27746039,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000184825	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs169263	0.83[AMR][1000 genomes]
rs187995	0.83[AMR][1000 genomes]
rs200959	0.83[AMR][1000 genomes]
rs200970	0.83[AMR][1000 genomes]
rs2200870	1.00[AMR][1000 genomes]
rs55768730	1.00[AMR][1000 genomes]
rs55965630	1.00[AMR][1000 genomes]
rs55987929	1.00[AMR][1000 genomes]
rs56221999	0.83[AMR][1000 genomes]
rs56262840	0.83[AMR][1000 genomes]
rs56366090	1.00[AMR][1000 genomes]
rs58700542	0.83[AMR][1000 genomes]
rs59021090	0.83[AMR][1000 genomes]
rs60550713	1.00[EUR][1000 genomes]
rs6904979	1.00[AMR][1000 genomes]
rs73739150	1.00[AMR][1000 genomes]
rs73739606	0.83[AMR][1000 genomes]
rs73739685	0.83[AMR][1000 genomes]
rs73739750	1.00[AMR][1000 genomes]
rs73739773	1.00[AMR][1000 genomes]
rs73740805	1.00[AMR][1000 genomes]
rs73740842	1.00[AMR][1000 genomes]
rs73742455	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
3	nsv432858	chr6:27719375-28011652	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	387 gene(s)	inside rSNPs	diseases
4	nsv1017440	chr6:27734824-27864277	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	370 gene(s)	inside rSNPs	diseases
5	nsv1022173	chr6:27734824-27959408	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	379 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27740200-27745200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:27740400-27745200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:27742200-27744800	Weak transcription	HepG2	liver
4	chr6:27743600-27745600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:27743600-27750000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:27744200-27746400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:27744400-27744800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:27744400-27745200	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr6:27744400-27745600	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr6:27744600-27744800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:27744600-27744800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
12	chr6:27744600-27745000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:27744600-27745600	Active TSS	A549	lung
14	chr6:27744600-27745600	Flanking Active TSS	GM12878-XiMat	blood
15	chr6:27744600-27745600	Flanking Active TSS	K562	blood

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