Variant report

Variant	rs73739685
Chromosome Location	chr6:27689630-27689631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27686786..27690624-chr6:27717358..27721129,5	K562	blood:
2	chr6:27100798..27103607-chr6:27688775..27690811,2	K562	blood:
3	chr6:27687897..27691780-chr6:27691811..27694513,3	MCF-7	breast:
4	chr6:27665264..27666796-chr6:27688059..27690362,2	K562	blood:
5	chr6:27688928..27690631-chr6:27710497..27712546,2	MCF-7	breast:
6	chr6:27658926..27663446-chr6:27685398..27690588,6	K562	blood:
7	chr6:27659151..27662876-chr6:27687364..27691190,4	K562	blood:
8	chr6:27114795..27117088-chr6:27688794..27690487,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265565	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000184825	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12111051	1.00[EUR][1000 genomes]
rs149854	1.00[EUR][1000 genomes]
rs149879	1.00[EUR][1000 genomes]
rs16867858	1.00[EUR][1000 genomes]
rs16867899	1.00[EUR][1000 genomes]
rs16867901	1.00[EUR][1000 genomes]
rs169263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs187995	1.00[AMR][1000 genomes]
rs200959	1.00[AMR][1000 genomes]
rs200962	1.00[EUR][1000 genomes]
rs200970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2200870	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs276372	1.00[EUR][1000 genomes]
rs425159	1.00[EUR][1000 genomes]
rs55768730	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55965630	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55987929	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56221999	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56262840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56366090	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58359716	1.00[EUR][1000 genomes]
rs58458505	0.83[AMR][1000 genomes]
rs58700542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59021090	1.00[AMR][1000 genomes]
rs59716769	0.85[AMR][1000 genomes]
rs61275289	0.83[AMR][1000 genomes]
rs6456800	1.00[EUR][1000 genomes]
rs6904979	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739117	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739122	1.00[EUR][1000 genomes]
rs73739150	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739606	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739750	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73739773	0.83[AMR][1000 genomes]
rs73740805	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73740842	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73742455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs839777	1.00[EUR][1000 genomes]
rs9295739	1.00[EUR][1000 genomes]
rs9461396	1.00[EUR][1000 genomes]
rs9468189	1.00[EUR][1000 genomes]
rs9468190	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	esv3327708	chr6:27683503-27692934	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27681600-27692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:27687800-27689800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:27688600-27689800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:27688600-27689800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:27688600-27690000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:27688600-27690000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:27688600-27690000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:27688600-27690000	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr6:27688600-27690000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:27688600-27690200	Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:27688800-27689800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:27688800-27690000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr6:27688800-27690000	Active TSS	H1 Cell Line	embryonic stem cell
14	chr6:27689000-27690000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:27689200-27689800	Flanking Active TSS	K562	blood
16	chr6:27689400-27690200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:27689600-27689800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:27689600-27690000	Active TSS	GM12878-XiMat	blood
19	chr6:27689600-27690200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
20	chr6:27689600-27690400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr6:27689600-27691600	Weak transcription	NHEK	skin
22	chr6:27689600-27694200	Weak transcription	A549	lung

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