Variant report

Variant	rs61297171
Chromosome Location	chr12:30794350-30794351
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:30794285-30794432	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:30787506..30790703-chr12:30791506..30796322,4	K562	blood:

Variant related genes	Relation type
IPO8	TF binding region
ENSG00000133704	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16906667	1.00[AMR][1000 genomes]
rs16906676	1.00[AMR][1000 genomes]
rs16906678	1.00[AMR][1000 genomes]
rs16906714	1.00[AMR][1000 genomes]
rs3850962	1.00[AMR][1000 genomes]
rs3850963	1.00[AMR][1000 genomes]
rs59463115	1.00[AMR][1000 genomes]
rs59551332	1.00[AMR][1000 genomes]
rs60389639	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60547392	1.00[AMR][1000 genomes]
rs7137533	1.00[AMR][1000 genomes]
rs7962702	1.00[AMR][1000 genomes]
rs7962737	1.00[AMR][1000 genomes]
rs7962761	1.00[AMR][1000 genomes]
rs7968828	1.00[AMR][1000 genomes]
rs7971480	1.00[AMR][1000 genomes]
rs7974821	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3343291	chr12:30455597-30992837	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832361	chr12:30794030-30997241	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:30767000-30844200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:30771000-30812200	Weak transcription	Aorta	Aorta
3	chr12:30771200-30804200	Weak transcription	Fetal Brain Male	brain
4	chr12:30774600-30812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:30775600-30815400	Weak transcription	Right Ventricle	heart
6	chr12:30775800-30813200	Weak transcription	HMEC	breast
7	chr12:30775800-30815200	Weak transcription	NHEK	skin
8	chr12:30776000-30808400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr12:30779200-30812200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr12:30779400-30796400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:30779800-30825000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr12:30780200-30795000	Weak transcription	Fetal Intestine Small	intestine
13	chr12:30780400-30796200	Weak transcription	Hela-S3	cervix
14	chr12:30780800-30847000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:30781200-30797600	Strong transcription	Primary B cells from cord blood	blood
16	chr12:30781200-30806600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr12:30781800-30796200	Weak transcription	NHLF	lung
18	chr12:30781800-30826400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr12:30782400-30814800	Weak transcription	Brain Angular Gyrus	brain
20	chr12:30782400-30821200	Weak transcription	Esophagus	oesophagus
21	chr12:30783800-30798400	Weak transcription	HepG2	liver
22	chr12:30783800-30827400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr12:30783800-30829000	Weak transcription	Small Intestine	intestine
24	chr12:30784000-30803400	Weak transcription	HSMMtube	muscle
25	chr12:30784000-30815800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr12:30784600-30803400	Weak transcription	K562	blood
27	chr12:30784800-30836600	Weak transcription	Fetal Heart	heart
28	chr12:30785000-30796000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr12:30785000-30800800	Weak transcription	Brain Germinal Matrix	brain
30	chr12:30785000-30847800	Weak transcription	Gastric	stomach
31	chr12:30785200-30796200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr12:30785200-30796600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:30785200-30846400	Weak transcription	Spleen	Spleen
34	chr12:30785400-30847200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:30785800-30809000	Weak transcription	Pancreas	Pancrea
36	chr12:30785800-30813200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:30786000-30813000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr12:30786000-30826600	Weak transcription	Colonic Mucosa	Colon
39	chr12:30786800-30808400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:30787200-30801200	Weak transcription	NH-A	brain
41	chr12:30787200-30802000	Weak transcription	NHDF-Ad	bronchial
42	chr12:30787200-30805200	Weak transcription	GM12878-XiMat	blood
43	chr12:30787200-30813000	Weak transcription	Ovary	ovary
44	chr12:30787200-30813400	Weak transcription	Brain Substantia Nigra	brain
45	chr12:30787200-30821200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr12:30788000-30821000	Weak transcription	Stomach Mucosa	stomach
47	chr12:30789000-30802000	Weak transcription	HUVEC	blood vessel
48	chr12:30790000-30798800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr12:30790000-30803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:30790000-30813000	Weak transcription	Brain Cingulate Gyrus	brain

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