Variant report

Variant	rs6131218
Chromosome Location	chr20:11472151-11472152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6131211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6134175	1.00[EUR][1000 genomes]
rs6134208	1.00[EUR][1000 genomes]
rs6134242	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6134247	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6134251	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6134268	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6134273	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8182998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3382747	chr20:11468552-11472950	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11471600-11473400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr20:11471600-11475000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr20:11471600-11475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:11471800-11472200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr20:11471800-11472400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr20:11471800-11472600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr20:11472000-11472200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr20:11472000-11472200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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