Variant report

Variant	rs6134268
Chromosome Location	chr20:11477144-11477145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6131211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6131218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6134208	1.00[EUR][1000 genomes]
rs6134242	1.00[EUR][1000 genomes]
rs6134247	1.00[EUR][1000 genomes]
rs6134251	1.00[EUR][1000 genomes]
rs6134273	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8182998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11472400-11478200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr20:11472400-11479600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:11474000-11479400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:11474000-11479600	Weak transcription	HMEC	breast
5	chr20:11474000-11479600	Weak transcription	NHEK	skin
6	chr20:11476000-11477400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:11476400-11481000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr20:11476800-11477400	Enhancers	A549	lung
9	chr20:11476800-11477600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr20:11476800-11478200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr20:11477000-11477400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr20:11477000-11477400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr20:11477000-11477400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:11477000-11477400	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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