Variant report

Variant	rs61321448
Chromosome Location	chr5:180257591-180257592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:40)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:40 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:180257363-180258201	GM12891	blood:	n/a	n/a
2	MAX	chr5:180257588-180259188	HCT-116	colon:	n/a	n/a
3	POLR2A	chr5:180257365-180258948	GM12891	blood:	n/a	n/a
4	POLR2A	chr5:180257433-180259060	K562	blood:	n/a	n/a
5	TCF12	chr5:180257588-180259210	A549	lung:	n/a	n/a
6	POLR2A	chr5:180257128-180259155	GM12892	blood:	n/a	n/a
7	POLR2A	chr5:180257579-180257591	MCF-7	breast:	n/a	n/a
8	POU2F2	chr5:180257451-180258158	GM12891	blood:	n/a	n/a
9	POLR2A	chr5:180257297-180260215	GM12878	blood:	n/a	n/a
10	NFIC	chr5:180257528-180258956	GM12878	blood:	n/a	n/a
11	POU2F2	chr5:180257403-180258879	GM12878	blood:	n/a	n/a
12	TEAD4	chr5:180257175-180258935	K562	blood:	n/a	n/a
13	FOXM1	chr5:180257516-180258078	GM12878	blood:	n/a	n/a
14	TAF1	chr5:180257577-180258834	GM12878	blood:	n/a	n/a
15	BCLAF1	chr5:180257580-180258891	GM12878	blood:	n/a	n/a
16	E2F6	chr5:180257585-180259214	H1-hESC	embryonic stem cell:	n/a	n/a
17	POLR2A	chr5:180257461-180259058	GM12891	blood:	n/a	n/a
18	MXI1	chr5:180257533-180259086	IMR90	lung:	n/a	n/a
19	MAX	chr5:180257577-180259058	K562	blood:	n/a	n/a
20	POLR2A	chr5:180257345-180259035	GM12878	blood:	n/a	n/a
21	STAT5A	chr5:180257582-180258835	GM12878	blood:	n/a	n/a
22	POLR2A	chr5:180257385-180259199	GM12878	blood:	n/a	n/a
23	HEY1	chr5:180257543-180258950	K562	blood:	n/a	n/a
24	POLR2A	chr5:180257356-180258992	GM12892	blood:	n/a	n/a
25	POLR2A	chr5:180257531-180259083	HUVEC	blood vessel:	n/a	n/a
26	MTA3	chr5:180257084-180259398	GM12878	blood:	n/a	n/a
27	CBX3	chr5:180256725-180258272	K562	blood:	n/a	n/a
28	POLR2A	chr5:180257371-180259104	GM12891	blood:	n/a	n/a
29	POLR2A	chr5:180257311-180259368	K562	blood:	n/a	n/a
30	NR2F2	chr5:180257581-180258396	K562	blood:	n/a	n/a
31	SIN3AK20	chr5:180257521-180259264	MCF-7	breast:	n/a	n/a
32	YY1	chr5:180257288-180258863	GM12892	blood:	n/a	n/a
33	MXI1	chr5:180257506-180259231	SK-N-SH	brain:	n/a	n/a
34	PML	chr5:180257587-180258945	K562	blood:	n/a	n/a
35	PML	chr5:180257571-180259007	GM12878	blood:	n/a	n/a
36	POLR2A	chr5:180257236-180259035	GM12878	blood:	n/a	n/a
37	POLR2A	chr5:180256876-180259164	GM12892	blood:	n/a	n/a
38	POLR2A	chr5:180256606-180260631	GM12878	blood:	n/a	n/a
39	POLR2A	chr5:180257318-180258991	GM12892	blood:	n/a	n/a
40	ZEB1	chr5:180257507-180258077	GM12878	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:180256399..180259891-chr5:180287425..180289762,3	K562	blood:
2	chr5:180255602..180258511-chr5:180276329..180279939,4	K562	blood:
3	chr5:180256272..180261271-chr5:180284313..180290761,15	MCF-7	breast:
4	chr5:180257450..180259454-chr5:180621834..180624735,2	MCF-7	breast:
5	chr5:180254080..180259696-chr5:180286312..180289720,8	MCF-7	breast:
6	chr5:180255602..180258414-chr5:180276329..180278582,3	K562	blood:
7	chr5:180256710..180258526-chr5:180275474..180278085,2	MCF-7	breast:
8	chr5:180234969..180240620-chr5:180256376..180260296,6	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTNL8-3	chr5:180256959-180258229	NONHSAT105836
2	lnc-BTNL8-3	chr5:180256959-180258806	NONHSAT105837
3	lnc-BTNL8-3	chr5:180256959-180258229	NONHSAT105838
4	lnc-BTNL8-3	chr5:180256959-180258229	NONHSAT105839
5	lnc-BTNL8-3	chr5:180256959-180258229	NONHSAT105840
6	lnc-BTNL8-3	chr5:180256959-180258595	NONHSAT105841
7	lnc-BTNL8-3	chr5:180256959-180258229	NONHSAT105842
8	lnc-BTNL8-3	chr5:180256969-180258229	NONHSAT105843

No data

Variant related genes	Relation type
LINC00847	TF binding region
ENSG00000250900	Chromatin interaction
ENSG00000196670	Chromatin interaction
ENSG00000131446	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4700987	0.95[ASN][1000 genomes]
rs4700988	0.95[ASN][1000 genomes]
rs60073078	1.00[ASN][1000 genomes]
rs73815143	1.00[ASN][1000 genomes]
rs936709	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030697	chr5:179710469-180686563	ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	184 gene(s)	inside rSNPs	diseases
2	nsv1026417	chr5:179721376-180291360	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1031836	chr5:179742033-180676122	Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv537984	chr5:179742033-180676122	Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
5	nsv949199	chr5:179743553-180696889	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
6	nsv533204	chr5:180008319-180273638	Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
7	nsv1015152	chr5:180014800-180567614	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
8	nsv537987	chr5:180014800-180567614	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
9	nsv1034993	chr5:180059323-180686563	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
10	nsv534263	chr5:180063182-180696806	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	166 gene(s)	inside rSNPs	diseases
11	nsv1025669	chr5:180069992-180686563	Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
12	esv2759399	chr5:180079970-180281476	Genic enhancers Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
13	esv2758033	chr5:180087198-180281476	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
14	nsv537993	chr5:180119301-180686563	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	158 gene(s)	inside rSNPs	diseases
15	nsv1026978	chr5:180137823-180686563	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
16	nsv949443	chr5:180144688-180503368	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	77 gene(s)	inside rSNPs	diseases
17	nsv1032677	chr5:180151997-180686563	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
18	nsv469692	chr5:180185452-180360834	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
19	nsv482702	chr5:180185452-180360834	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
20	nsv1022107	chr5:180203044-180686563	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
21	nsv1033854	chr5:180208441-180686563	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
22	nsv537995	chr5:180208441-180686563	Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
23	nsv1033472	chr5:180208501-180575682	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
24	nsv537996	chr5:180208501-180575682	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	79 gene(s)	inside rSNPs	diseases
25	nsv469788	chr5:180210102-180403232	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
26	nsv482337	chr5:180210102-180403232	Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
27	nsv1018788	chr5:180216969-180686563	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
28	nsv1024379	chr5:180217029-180686563	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
29	nsv537997	chr5:180217029-180686563	Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
30	nsv1032399	chr5:180229033-180429831	Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
31	nsv537998	chr5:180229033-180429831	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
32	nsv1027391	chr5:180229033-180447744	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	74 gene(s)	inside rSNPs	diseases
33	nsv1018245	chr5:180229033-180686563	Active TSS Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
34	nsv537999	chr5:180229033-180686563	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	155 gene(s)	inside rSNPs	diseases
35	nsv428133	chr5:180232451-180786488	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	157 gene(s)	inside rSNPs	diseases
36	nsv1032922	chr5:180234136-180429831	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
37	nsv1027735	chr5:180234136-180447744	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
38	nsv538000	chr5:180234136-180447744	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
39	nsv1028360	chr5:180234136-180686563	Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	149 gene(s)	inside rSNPs	diseases
40	nsv1035134	chr5:180240674-180429831	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
41	nsv538001	chr5:180240674-180429831	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
42	nsv1033040	chr5:180240674-180686563	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
43	nsv538002	chr5:180240674-180686563	Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
44	nsv1029448	chr5:180242884-180429831	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
45	nsv538003	chr5:180242884-180429831	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
46	nsv1015860	chr5:180242884-180447744	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
47	nsv1028885	chr5:180242884-180686563	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
48	nsv538004	chr5:180242884-180686563	Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	137 gene(s)	inside rSNPs	diseases
49	nsv1020386	chr5:180251695-180447744	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
50	nsv538005	chr5:180251695-180447744	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:180249000-180257600	Weak transcription	Ovary	ovary
2	chr5:180253600-180257600	Weak transcription	Hela-S3	cervix
3	chr5:180254200-180257600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:180255200-180257800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:180256200-180257800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:180256400-180257600	ZNF genes & repeats	Fetal Thymus	thymus
7	chr5:180256400-180257800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:180256400-180258000	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr5:180256400-180258000	ZNF genes & repeats	Fetal Intestine Large	intestine
10	chr5:180256400-180258000	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr5:180256400-180258200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr5:180256600-180257600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr5:180256600-180257800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:180256600-180257800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
15	chr5:180256600-180257800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr5:180256800-180257600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr5:180256800-180257600	ZNF genes & repeats	Fetal Lung	lung
18	chr5:180256800-180257600	Flanking Active TSS	Pancreas	Pancrea
19	chr5:180256800-180257600	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
20	chr5:180256800-180257800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:180256800-180257800	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr5:180256800-180257800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr5:180256800-180257800	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr5:180256800-180257800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr5:180256800-180257800	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr5:180256800-180258000	Flanking Active TSS	Liver	Liver
27	chr5:180256800-180258200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
28	chr5:180256800-180259000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
29	chr5:180257000-180257600	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr5:180257000-180257600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr5:180257000-180257600	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr5:180257000-180257600	Enhancers	Placenta Amnion	Placenta Amnion
33	chr5:180257000-180257600	Flanking Active TSS	Psoas Muscle	Psoas
34	chr5:180257000-180257600	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
35	chr5:180257000-180257600	Transcr. at gene 5' and 3'	Dnd41	blood
36	chr5:180257000-180257800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr5:180257000-180257800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr5:180257000-180257800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr5:180257000-180257800	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr5:180257000-180257800	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr5:180257000-180257800	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr5:180257000-180257800	Flanking Active TSS	Esophagus	oesophagus
43	chr5:180257000-180258000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr5:180257000-180258000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr5:180257000-180258000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr5:180257000-180258000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr5:180257000-180258200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
48	chr5:180257000-180258200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
49	chr5:180257000-180259000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:180257000-180259200	Active TSS	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links