Variant report

Variant	rs6132755
Chromosome Location	chr20:24628568-24628569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24623933..24625636-chr20:24628321..24630040,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4815295	0.88[ASN][1000 genomes]
rs6036858	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114812	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv912824	chr20:24612808-24639916	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24615400-24633800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:24616200-24639600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr20:24616400-24630200	Weak transcription	Brain Angular Gyrus	brain
4	chr20:24620000-24641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr20:24625200-24630600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:24625600-24629400	Weak transcription	Osteobl	bone
7	chr20:24625600-24633800	Weak transcription	Spleen	Spleen
8	chr20:24625800-24628600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:24626000-24629000	Enhancers	Thymus	Thymus
10	chr20:24626000-24629600	Enhancers	Fetal Thymus	thymus
11	chr20:24626400-24629000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:24626600-24628600	Weak transcription	Brain Substantia Nigra	brain
13	chr20:24626600-24628800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr20:24626800-24628600	Weak transcription	Brain Hippocampus Middle	brain
15	chr20:24627000-24629400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr20:24627400-24630200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr20:24627600-24628600	Enhancers	HMEC	breast
18	chr20:24628000-24628600	Enhancers	NHEK	skin
19	chr20:24628000-24633600	Enhancers	Fetal Brain Male	brain
20	chr20:24628200-24628600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:24628200-24628600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr20:24628400-24628800	Enhancers	Esophagus	oesophagus
23	chr20:24628400-24629400	Weak transcription	Fetal Brain Female	brain

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