Variant report

Variant	rs61328249
Chromosome Location	chr9:79059081-79059082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:79057879..79060217-chr9:79273582..79275232,2	MCF-7	breast:
2	chr9:79057975..79060162-chr9:79063071..79066178,3	MCF-7	breast:
3	chr9:79018063..79018678-chr9:79058921..79059562,2	MCF-7	breast:
4	chr9:79058598..79061580-chr9:79067952..79069510,2	MCF-7	breast:
5	chr9:79056464..79059191-chr9:79073425..79075482,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10114296	1.00[AMR][1000 genomes]
rs10116860	1.00[AMR][1000 genomes]
rs10124464	1.00[AMR][1000 genomes]
rs10125804	1.00[AMR][1000 genomes]
rs11144872	1.00[AMR][1000 genomes]
rs11144874	1.00[AMR][1000 genomes]
rs11144885	1.00[AMR][1000 genomes]
rs11144886	1.00[AMR][1000 genomes]
rs12000283	1.00[AMR][1000 genomes]
rs12003653	1.00[AMR][1000 genomes]
rs12338735	1.00[AMR][1000 genomes]
rs12345290	1.00[AMR][1000 genomes]
rs12346177	1.00[AMR][1000 genomes]
rs12346217	1.00[AMR][1000 genomes]
rs12346978	1.00[AMR][1000 genomes]
rs12349438	1.00[AMR][1000 genomes]
rs28391132	1.00[AMR][1000 genomes]
rs28435584	1.00[AMR][1000 genomes]
rs28477196	1.00[AMR][1000 genomes]
rs28591137	1.00[AMR][1000 genomes]
rs28704710	1.00[AMR][1000 genomes]
rs28837371	1.00[AMR][1000 genomes]
rs55841807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55843495	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55868826	1.00[AMR][1000 genomes]
rs57699869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7018821	1.00[AMR][1000 genomes]
rs7022424	1.00[AMR][1000 genomes]
rs7022806	1.00[AMR][1000 genomes]
rs7022930	1.00[AMR][1000 genomes]
rs7026641	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7030639	1.00[AMR][1000 genomes]
rs7031173	1.00[AMR][1000 genomes]
rs7032475	1.00[AMR][1000 genomes]
rs7039907	1.00[AMR][1000 genomes]
rs7042938	1.00[AMR][1000 genomes]
rs7045064	1.00[AMR][1000 genomes]
rs73650203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650204	1.00[AMR][1000 genomes]
rs73650205	1.00[AMR][1000 genomes]
rs73650206	1.00[AMR][1000 genomes]
rs73650208	1.00[AMR][1000 genomes]
rs73650209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650210	1.00[AMR][1000 genomes]
rs73650211	1.00[AMR][1000 genomes]
rs73650212	1.00[AMR][1000 genomes]
rs73650217	1.00[AMR][1000 genomes]
rs73650218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73652926	1.00[AMR][1000 genomes]
rs73652927	1.00[AMR][1000 genomes]
rs73652929	0.83[AFR][1000 genomes]
rs73652930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73652940	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73652941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73652942	1.00[AMR][1000 genomes]
rs73652943	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73652944	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73652945	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7863426	1.00[AMR][1000 genomes]
rs7867442	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv520423	chr9:79047117-79065299	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79057200-79059200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr9:79057200-79062200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:79057200-79062600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:79057400-79062600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:79057400-79062600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:79057400-79062600	Weak transcription	Osteobl	bone
7	chr9:79058000-79062800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr9:79058600-79060000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:79058600-79060000	Enhancers	Stomach Mucosa	stomach
10	chr9:79059000-79059200	Enhancers	HepG2	liver
11	chr9:79059000-79059600	Enhancers	GM12878-XiMat	blood
12	chr9:79059000-79060000	Enhancers	Fetal Intestine Small	intestine

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