Variant report

Variant	rs7031173
Chromosome Location	chr9:79018265-79018266
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:79008991..79011604-chr9:79014498..79020251,6	K562	blood:
2	chr9:79017921..79018920-chr9:79318594..79320251,5	K562	blood:
3	chr9:79018163..79018864-chr9:79034443..79035433,3	MCF-7	breast:
4	chr9:79018063..79018678-chr9:79058921..79059562,2	MCF-7	breast:
5	chr9:79017018..79018917-chr9:79033431..79035407,2	MCF-7	breast:
6	chr9:79017044..79018975-chr9:79065546..79068177,2	MCF-7	breast:
7	chr9:79015879..79018411-chr9:79025794..79028344,2	MCF-7	breast:
8	chr9:79009095..79011288-chr9:79015114..79018669,3	K562	blood:
9	chr9:79017985..79018949-chr9:79034507..79035397,3	MCF-7	breast:
10	chr9:79016781..79018743-chr9:79034547..79036492,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000233814	Chromatin interaction
ENSG00000135002	Chromatin interaction
ENSG00000187210	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10114296	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10116860	1.00[AMR][1000 genomes]
rs10124464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10125804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11144872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11144874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11144885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11144886	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12000283	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12003653	1.00[AMR][1000 genomes]
rs12338735	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12345290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346177	1.00[AMR][1000 genomes]
rs12346217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346978	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12349438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28391132	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28435584	1.00[AMR][1000 genomes]
rs28477196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591137	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28704710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28837371	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55841807	1.00[AMR][1000 genomes]
rs55843495	1.00[AMR][1000 genomes]
rs55868826	1.00[AMR][1000 genomes]
rs57699869	1.00[AMR][1000 genomes]
rs61328249	1.00[AMR][1000 genomes]
rs7018821	1.00[AMR][1000 genomes]
rs7022424	1.00[AMR][1000 genomes]
rs7022806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7022930	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7026641	1.00[AMR][1000 genomes]
rs7030639	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7032475	1.00[AMR][1000 genomes]
rs7039907	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7042938	1.00[AMR][1000 genomes]
rs7045064	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650203	1.00[AMR][1000 genomes]
rs73650204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650205	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650208	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650209	1.00[AMR][1000 genomes]
rs73650210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650217	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73650218	1.00[AMR][1000 genomes]
rs73650220	1.00[AMR][1000 genomes]
rs73652926	1.00[AMR][1000 genomes]
rs73652927	1.00[AMR][1000 genomes]
rs73652930	1.00[AMR][1000 genomes]
rs73652940	1.00[AMR][1000 genomes]
rs73652941	1.00[AMR][1000 genomes]
rs73652942	1.00[AMR][1000 genomes]
rs73652943	1.00[AMR][1000 genomes]
rs73652944	1.00[AMR][1000 genomes]
rs73652945	1.00[AMR][1000 genomes]
rs7863426	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7867442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv931033	chr9:78850330-79366454	Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv893478	chr9:78933874-79101006	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv893479	chr9:78971253-79275226	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:79010600-79018400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:79010600-79019400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:79010800-79018400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:79010800-79018400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:79010800-79018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:79010800-79018400	Weak transcription	NHDF-Ad	bronchial
7	chr9:79011000-79018400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:79011000-79018400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr9:79011000-79018400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:79011200-79018400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:79015200-79019000	Enhancers	HepG2	liver
12	chr9:79015200-79019600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:79015600-79018400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:79015800-79018400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:79016000-79018400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:79016000-79018400	Weak transcription	Hela-S3	cervix
17	chr9:79016000-79018400	Weak transcription	HMEC	breast
18	chr9:79016000-79018400	Weak transcription	NHEK	skin
19	chr9:79016000-79018600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:79016000-79023000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:79016800-79018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:79016800-79019600	Enhancers	Liver	Liver
23	chr9:79016800-79020000	Enhancers	Fetal Intestine Small	intestine
24	chr9:79017000-79018400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:79017200-79018400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:79017200-79018400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:79017200-79018400	Weak transcription	NH-A	brain
28	chr9:79017800-79019800	Enhancers	Fetal Intestine Large	intestine
29	chr9:79018000-79018400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr9:79018000-79018400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr9:79018000-79018400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr9:79018000-79018400	Enhancers	HUVEC	blood vessel
33	chr9:79018000-79018400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr9:79018000-79018400	Enhancers	NHLF	lung
35	chr9:79018000-79018600	Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr9:79018000-79019000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr9:79018000-79019000	Enhancers	Dnd41	blood
38	chr9:79018000-79019000	Enhancers	HSMM	muscle
39	chr9:79018200-79018400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr9:79018200-79018600	Enhancers	Primary T cells from cord blood	blood
41	chr9:79018200-79018600	Flanking Active TSS	Duodenum Mucosa	Duodenum
42	chr9:79018200-79018600	Flanking Active TSS	GM12878-XiMat	blood
43	chr9:79018200-79018800	Flanking Active TSS	A549	lung
44	chr9:79018200-79019000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr9:79018200-79019000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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