Variant report

Variant	rs61328923
Chromosome Location	chr5:108151600-108151601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10039544	0.81[AMR][1000 genomes]
rs10042569	0.81[ASN][1000 genomes]
rs10061811	0.97[EUR][1000 genomes]
rs10065605	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10072148	0.80[EUR][1000 genomes]
rs17163941	0.97[EUR][1000 genomes]
rs28718068	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6884637	0.80[EUR][1000 genomes]
rs6889965	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9326753	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108137600-108153000	Weak transcription	Osteobl	bone
2	chr5:108138000-108153200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:108140800-108152800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr5:108145400-108153000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:108146600-108156000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:108146800-108183600	Weak transcription	Ovary	ovary
7	chr5:108147000-108153800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:108147000-108153800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:108147000-108165800	Weak transcription	Left Ventricle	heart
10	chr5:108147000-108198800	Weak transcription	Aorta	Aorta
11	chr5:108147000-108208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:108147600-108154000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:108147800-108154400	Weak transcription	NHEK	skin
14	chr5:108147800-108159200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:108149600-108153000	Weak transcription	NHLF	lung
16	chr5:108150200-108151800	Enhancers	Colon Smooth Muscle	Colon
17	chr5:108150400-108153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:108150400-108171400	Weak transcription	NHDF-Ad	bronchial
19	chr5:108150600-108152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:108150600-108153000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:108150800-108152000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:108150800-108152000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:108150800-108152400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr5:108150800-108155600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:108151400-108154400	Weak transcription	Fetal Heart	heart

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