Variant report

Variant	rs10065605
Chromosome Location	chr5:108096435-108096436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108082592..108085092-chr5:108095737..108100494,4	K562	blood:

Variant related genes	Relation type
ENSG00000151422	Chromatin interaction

rs_ID	r²[population]
rs10036583	1.00[JPT][hapmap]
rs10037675	1.00[JPT][hapmap]
rs10039132	1.00[JPT][hapmap]
rs10039951	1.00[JPT][hapmap]
rs10041657	1.00[JPT][hapmap]
rs10042152	1.00[JPT][hapmap]
rs10042569	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10050547	1.00[JPT][hapmap]
rs10052208	1.00[JPT][hapmap]
rs10052531	1.00[JPT][hapmap]
rs10054086	1.00[JPT][hapmap]
rs10061811	1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs10064960	1.00[JPT][hapmap]
rs10065611	1.00[JPT][hapmap]
rs10070327	1.00[JPT][hapmap]
rs10072148	0.80[EUR][1000 genomes]
rs10077917	1.00[JPT][hapmap]
rs10223256	0.82[JPT][hapmap]
rs10477428	1.00[JPT][hapmap]
rs10477429	1.00[JPT][hapmap]
rs10477432	1.00[JPT][hapmap]
rs10477931	1.00[JPT][hapmap]
rs11741855	1.00[JPT][hapmap]
rs11748534	1.00[JPT][hapmap]
rs12719099	1.00[JPT][hapmap]
rs13358881	1.00[JPT][hapmap]
rs13359423	1.00[JPT][hapmap]
rs13360253	1.00[JPT][hapmap]
rs1396444	1.00[JPT][hapmap]
rs1423456	1.00[JPT][hapmap]
rs1423459	1.00[JPT][hapmap]
rs17161466	1.00[JPT][hapmap]
rs17161505	1.00[JPT][hapmap]
rs17161540	1.00[JPT][hapmap]
rs17161562	1.00[JPT][hapmap]
rs17163941	1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs2009646	1.00[JPT][hapmap]
rs2081128	1.00[JPT][hapmap]
rs2113001	1.00[JPT][hapmap]
rs2229085	1.00[JPT][hapmap]
rs28718068	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2900037	1.00[JPT][hapmap]
rs35141056	1.00[JPT][hapmap]
rs3805600	1.00[JPT][hapmap]
rs3805601	1.00[JPT][hapmap]
rs41508849	1.00[JPT][hapmap]
rs4358573	1.00[JPT][hapmap]
rs4361568	1.00[JPT][hapmap]
rs4479887	1.00[JPT][hapmap]
rs4560594	1.00[JPT][hapmap]
rs4560595	1.00[JPT][hapmap]
rs61328923	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6594341	1.00[JPT][hapmap]
rs6869591	1.00[JPT][hapmap]
rs6873130	1.00[JPT][hapmap]
rs6873917	1.00[JPT][hapmap]
rs6884637	0.80[EUR][1000 genomes]
rs6888173	1.00[JPT][hapmap]
rs6889965	0.81[ASN][1000 genomes]
rs7711892	1.00[JPT][hapmap]
rs7715658	1.00[JPT][hapmap]
rs7728920	1.00[JPT][hapmap]
rs889269	1.00[JPT][hapmap]
rs9326750	1.00[JPT][hapmap]
rs9326752	1.00[JPT][hapmap]
rs9326753	0.80[EUR][1000 genomes]
rs9885265	1.00[JPT][hapmap]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108085600-108102600	Weak transcription	Lung	lung
2	chr5:108085600-108119800	Weak transcription	Left Ventricle	heart
3	chr5:108085800-108097800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:108085800-108097800	Weak transcription	Brain Angular Gyrus	brain
5	chr5:108086200-108119200	Weak transcription	Fetal Kidney	kidney
6	chr5:108086200-108120600	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:108088600-108097800	Weak transcription	Gastric	stomach
8	chr5:108089800-108119400	Weak transcription	Hela-S3	cervix
9	chr5:108089800-108119800	Weak transcription	HSMM	muscle
10	chr5:108090000-108105000	Weak transcription	NHLF	lung
11	chr5:108090000-108109800	Weak transcription	Adipose Nuclei	Adipose
12	chr5:108090200-108100600	Weak transcription	NHDF-Ad	bronchial
13	chr5:108090200-108127600	Weak transcription	NH-A	brain
14	chr5:108094800-108099200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:108095000-108096600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:108095000-108122600	Weak transcription	Right Ventricle	heart
17	chr5:108095200-108096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr5:108095400-108096600	Enhancers	Primary T cells from cord blood	blood
19	chr5:108095400-108096600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
20	chr5:108095600-108096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr5:108095600-108119400	Weak transcription	Aorta	Aorta
22	chr5:108095800-108099000	Weak transcription	A549	lung
23	chr5:108095800-108102600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:108096000-108096800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr5:108096000-108100600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr5:108096000-108119600	Weak transcription	Primary B cells from cord blood	blood
27	chr5:108096200-108097000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:108096200-108097800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:108096200-108100800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:108096200-108101200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:108096200-108109600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr5:108096200-108119800	Weak transcription	HSMMtube	muscle
33	chr5:108096400-108097800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:108096400-108097800	Weak transcription	GM12878-XiMat	blood
35	chr5:108096400-108098000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr5:108096400-108098400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr5:108096400-108098800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr5:108096400-108098800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:108096400-108100600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:108096400-108102200	Weak transcription	NHEK	skin
41	chr5:108096400-108102400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:108096400-108102400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr5:108096400-108105600	Weak transcription	HMEC	breast
44	chr5:108096400-108107200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr5:108096400-108107600	Weak transcription	Fetal Lung	lung
46	chr5:108096400-108108400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr5:108096400-108109200	Weak transcription	Fetal Muscle Leg	muscle
48	chr5:108096400-108109400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr5:108096400-108110400	Weak transcription	Fetal Brain Female	brain
50	chr5:108096400-108112800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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