Variant report

Variant	rs10477931
Chromosome Location	chr5:108093529-108093530
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108087050..108092037-chr5:108092288..108095333,5	K562	blood:
2	chr5:108091047..108093958-chr5:108097399..108100214,2	K562	blood:

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:174)

rs_ID	r²[population]
rs10035944	0.80[ASN][1000 genomes]
rs10036583	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10037675	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10039132	1.00[JPT][hapmap]
rs10039951	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs10040085	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10041657	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10041659	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10042152	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10042569	1.00[JPT][hapmap]
rs10050490	0.80[ASN][1000 genomes]
rs10050547	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10052208	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10052531	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10053476	0.80[ASN][1000 genomes]
rs10054086	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10058035	0.80[ASN][1000 genomes]
rs10061362	0.80[ASN][1000 genomes]
rs10061811	1.00[JPT][hapmap]
rs10062211	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10064960	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10065605	1.00[JPT][hapmap]
rs10065611	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10067117	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10070327	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10073473	0.80[ASN][1000 genomes]
rs10075620	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10077177	0.80[ASN][1000 genomes]
rs10077917	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10078143	0.80[ASN][1000 genomes]
rs10223256	0.82[JPT][hapmap]
rs10477428	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10477429	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10477430	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10477432	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10477932	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10477933	0.84[CEU][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10477934	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10477935	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10515396	1.00[CHB][hapmap]
rs11741855	1.00[JPT][hapmap]
rs11748534	1.00[JPT][hapmap]
rs11958426	0.80[ASN][1000 genomes]
rs12719099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13171006	1.00[CHB][hapmap]
rs13354622	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13355571	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13358881	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13359423	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13360253	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13360598	0.80[ASN][1000 genomes]
rs13361128	0.80[ASN][1000 genomes]
rs1396444	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1423456	1.00[JPT][hapmap]
rs1423459	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17161466	1.00[JPT][hapmap]
rs17161505	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17161540	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs17161562	1.00[JPT][hapmap]
rs17163941	1.00[JPT][hapmap]
rs1961616	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2009646	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2081127	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2081128	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2113001	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2229085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs28396658	0.80[ASN][1000 genomes]
rs28415902	0.80[ASN][1000 genomes]
rs28460265	0.80[ASN][1000 genomes]
rs28521452	0.80[ASN][1000 genomes]
rs28536717	0.80[ASN][1000 genomes]
rs28611371	0.80[ASN][1000 genomes]
rs28612304	0.80[ASN][1000 genomes]
rs28631256	0.80[ASN][1000 genomes]
rs28633642	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28651469	0.86[ASN][1000 genomes]
rs28765243	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28862652	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2900036	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2900037	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35141056	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs35464106	0.80[ASN][1000 genomes]
rs3805598	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805599	0.90[CEU][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3805600	1.00[JPT][hapmap]
rs3805601	1.00[JPT][hapmap]
rs41508849	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4358573	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4361568	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4448048	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4479887	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4537096	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4560594	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4560595	0.81[CEU][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs5019041	0.80[ASN][1000 genomes]
rs56985651	0.80[ASN][1000 genomes]
rs57561676	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57703314	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57719993	0.80[ASN][1000 genomes]
rs57908514	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57928004	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58193244	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58304901	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58530168	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59297048	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59821709	0.80[ASN][1000 genomes]
rs60126805	0.80[ASN][1000 genomes]
rs60618804	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61170909	0.80[ASN][1000 genomes]
rs62360774	0.80[ASN][1000 genomes]
rs62360777	0.80[ASN][1000 genomes]
rs62360778	0.80[ASN][1000 genomes]
rs62360779	0.80[ASN][1000 genomes]
rs62360783	0.80[ASN][1000 genomes]
rs62360784	0.80[ASN][1000 genomes]
rs62360790	0.80[ASN][1000 genomes]
rs62360791	0.80[ASN][1000 genomes]
rs62360793	0.80[ASN][1000 genomes]
rs62360824	0.80[ASN][1000 genomes]
rs62360827	0.80[ASN][1000 genomes]
rs62361335	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62361336	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62361337	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62361338	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62361341	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62361342	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62361343	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62361344	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62361345	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62363276	0.80[ASN][1000 genomes]
rs62363277	0.80[ASN][1000 genomes]
rs62363280	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62363281	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62363283	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62363284	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62363285	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62363287	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62363289	0.81[EUR][1000 genomes]
rs62363290	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6594341	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6594342	0.80[ASN][1000 genomes]
rs6863046	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6869591	1.00[JPT][hapmap]
rs6872127	0.80[ASN][1000 genomes]
rs6873130	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6873917	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6874497	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6874773	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6874968	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6875158	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6876542	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6876606	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6881932	0.80[ASN][1000 genomes]
rs6888173	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6889995	0.80[ASN][1000 genomes]
rs6890301	0.80[ASN][1000 genomes]
rs6890309	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6894386	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6897096	0.80[ASN][1000 genomes]
rs6897329	0.80[ASN][1000 genomes]
rs6897572	0.80[ASN][1000 genomes]
rs7711892	1.00[JPT][hapmap]
rs7715658	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7716358	0.80[ASN][1000 genomes]
rs7719821	0.80[ASN][1000 genomes]
rs7724385	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7728920	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs889269	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9326749	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9326750	1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9326751	0.80[ASN][1000 genomes]
rs9326752	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs9885265	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9885428	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108085600-108102600	Weak transcription	Lung	lung
2	chr5:108085600-108119800	Weak transcription	Left Ventricle	heart
3	chr5:108085800-108094400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:108085800-108095200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr5:108085800-108095200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:108085800-108095400	Weak transcription	Primary B cells from cord blood	blood
7	chr5:108085800-108095400	Weak transcription	A549	lung
8	chr5:108085800-108097800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:108085800-108097800	Weak transcription	Brain Angular Gyrus	brain
10	chr5:108086200-108095400	Weak transcription	Primary T cells from cord blood	blood
11	chr5:108086200-108095400	Weak transcription	Fetal Lung	lung
12	chr5:108086200-108095600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr5:108086200-108119200	Weak transcription	Fetal Kidney	kidney
14	chr5:108086200-108120600	Weak transcription	Brain Hippocampus Middle	brain
15	chr5:108086400-108094200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr5:108086400-108095000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:108088400-108095400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:108088600-108097800	Weak transcription	Gastric	stomach
19	chr5:108089400-108094400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:108089800-108095400	Weak transcription	HSMMtube	muscle
21	chr5:108089800-108119400	Weak transcription	Hela-S3	cervix
22	chr5:108089800-108119800	Weak transcription	HSMM	muscle
23	chr5:108090000-108095000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:108090000-108095200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:108090000-108095600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:108090000-108095600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:108090000-108105000	Weak transcription	NHLF	lung
28	chr5:108090000-108109800	Weak transcription	Adipose Nuclei	Adipose
29	chr5:108090200-108094200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:108090200-108094400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr5:108090200-108100600	Weak transcription	NHDF-Ad	bronchial
32	chr5:108090200-108127600	Weak transcription	NH-A	brain
33	chr5:108090600-108095400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr5:108090600-108095600	Weak transcription	NHEK	skin
35	chr5:108090600-108096000	Weak transcription	HMEC	breast
36	chr5:108091000-108094200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr5:108092800-108093600	Enhancers	Colon Smooth Muscle	Colon
38	chr5:108093200-108094400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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