Variant report

Variant	rs10223256
Chromosome Location	chr5:108042193-108042194
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:57913836..57916578-chr5:108041981..108044675,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10036583	0.82[JPT][hapmap]
rs10037675	0.82[JPT][hapmap]
rs10039132	0.82[JPT][hapmap]
rs10039951	0.82[JPT][hapmap]
rs10041657	0.82[JPT][hapmap]
rs10042152	0.82[JPT][hapmap]
rs10042569	0.82[JPT][hapmap]
rs10052208	0.82[JPT][hapmap]
rs10052531	0.82[JPT][hapmap]
rs10054086	0.82[JPT][hapmap]
rs10061811	0.82[JPT][hapmap]
rs10064960	0.82[JPT][hapmap]
rs10065605	0.82[JPT][hapmap]
rs10065611	0.82[JPT][hapmap]
rs10070327	0.82[JPT][hapmap]
rs10077917	0.82[JPT][hapmap]
rs10477428	0.82[JPT][hapmap]
rs10477429	0.82[JPT][hapmap]
rs10477432	0.82[JPT][hapmap]
rs10477931	0.82[JPT][hapmap]
rs11741855	0.82[JPT][hapmap]
rs11748534	0.82[JPT][hapmap]
rs12719099	0.82[JPT][hapmap]
rs13358881	0.82[JPT][hapmap]
rs13359423	0.82[JPT][hapmap]
rs13360253	0.82[JPT][hapmap]
rs1396444	0.82[JPT][hapmap]
rs1423456	0.82[JPT][hapmap]
rs1423457	0.82[AMR][1000 genomes]
rs1423459	0.82[JPT][hapmap]
rs17161466	0.82[JPT][hapmap]
rs17161505	0.82[JPT][hapmap]
rs17161540	0.82[JPT][hapmap]
rs17163941	0.82[JPT][hapmap]
rs2009646	0.82[JPT][hapmap]
rs2081128	0.82[JPT][hapmap]
rs2113001	0.82[JPT][hapmap]
rs2229085	0.82[JPT][hapmap]
rs28684578	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2900037	0.82[JPT][hapmap]
rs35141056	0.82[JPT][hapmap]
rs3805600	0.82[JPT][hapmap]
rs3805601	0.82[JPT][hapmap]
rs41508849	0.82[JPT][hapmap]
rs4358573	0.82[JPT][hapmap]
rs4361568	0.82[JPT][hapmap]
rs4479887	0.82[JPT][hapmap]
rs4560595	0.82[JPT][hapmap]
rs6594333	0.82[AMR][1000 genomes]
rs6594334	0.82[AMR][1000 genomes]
rs6594341	0.82[JPT][hapmap]
rs6869591	0.82[JPT][hapmap]
rs6873130	0.82[JPT][hapmap]
rs6888173	0.82[JPT][hapmap]
rs7711795	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7711892	0.82[JPT][hapmap]
rs7715658	0.82[JPT][hapmap]
rs7728920	0.82[JPT][hapmap]
rs889269	0.82[JPT][hapmap]
rs9285863	0.82[AMR][1000 genomes]
rs9326750	0.82[JPT][hapmap]
rs9326752	0.82[JPT][hapmap]
rs9885265	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv980959	chr5:108023194-108043010	Enhancers Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108041400-108042800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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