The 2.0 version of rSNPBase

Variant report

Variant rs6594342
Chromosome Location chr5:108211751-108211752
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108166600-108217000 Weak transcription Left Ventricle heart
2 chr5:108167200-108220400 Weak transcription Fetal Lung lung
3 chr5:108169400-108229200 Weak transcription Fetal Stomach stomach
4 chr5:108173400-108239800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr5:108182000-108217000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr5:108183800-108260400 Weak transcription Ovary ovary
7 chr5:108187200-108211800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr5:108194000-108217000 Weak transcription Esophagus oesophagus
9 chr5:108194600-108260000 Weak transcription Fetal Intestine Large intestine
10 chr5:108194800-108236200 Weak transcription Hela-S3 cervix
11 chr5:108195000-108211800 Weak transcription NHDF-Ad bronchial
12 chr5:108195200-108231600 Weak transcription Primary hematopoietic stem cells blood
13 chr5:108195200-108231600 Weak transcription Psoas Muscle Psoas
14 chr5:108195200-108234400 Weak transcription Muscle Satellite Cultured Cells --
15 chr5:108196800-108230000 Weak transcription Lung lung
16 chr5:108197000-108268200 Weak transcription Fetal Muscle Trunk muscle
17 chr5:108197400-108219800 Weak transcription Placenta Placenta
18 chr5:108198600-108229800 Weak transcription Fetal Muscle Leg muscle
19 chr5:108198600-108235000 Weak transcription Fetal Kidney kidney
20 chr5:108198800-108217000 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr5:108199200-108271400 Weak transcription Aorta Aorta
22 chr5:108200200-108232600 Weak transcription Brain Angular Gyrus brain
23 chr5:108200200-108246400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr5:108202000-108229200 Weak transcription Stomach Smooth Muscle stomach
25 chr5:108202200-108217200 Weak transcription Brain Hippocampus Middle brain
26 chr5:108202400-108212200 Weak transcription Brain Germinal Matrix brain
27 chr5:108203000-108212200 Weak transcription Colon Smooth Muscle Colon
28 chr5:108203600-108220400 Weak transcription Fetal Adrenal Gland Adrenal Gland
29 chr5:108203800-108323400 Weak transcription Primary B cells from cord blood blood
30 chr5:108204400-108216800 Weak transcription Primary monocytes fromperipheralblood blood
31 chr5:108204400-108237800 Weak transcription Monocytes-CD14+_RO01746 blood
32 chr5:108204600-108217000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr5:108204800-108219400 Weak transcription HSMMtube muscle
34 chr5:108205000-108219800 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr5:108205200-108214400 Weak transcription GM12878-XiMat blood
36 chr5:108205200-108220200 Weak transcription NH-A brain
37 chr5:108205400-108230200 Weak transcription Adipose Nuclei Adipose
38 chr5:108205400-108241400 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr5:108208000-108218800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr5:108208200-108268800 Weak transcription Primary T cells from cord blood blood
41 chr5:108209400-108230000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr5:108209600-108212800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr5:108209600-108213600 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr5:108209600-108220200 Weak transcription Osteobl bone
45 chr5:108209800-108224000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr5:108209800-108229800 Weak transcription HSMM muscle
47 chr5:108209800-108229800 Weak transcription NHEK skin
48 chr5:108209800-108234000 Weak transcription HMEC breast
49 chr5:108209800-108234400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr5:108210200-108216800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015