The 2.0 version of rSNPBase

Variant report

Variant rs62363277
Chromosome Location chr5:108139064-108139065
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108120200-108142200 Weak transcription Aorta Aorta
2 chr5:108120600-108146400 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr5:108120800-108146400 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr5:108121000-108139200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr5:108123400-108139400 Weak transcription Primary T helper cells PMA-I stimulated --
6 chr5:108124000-108139200 Weak transcription Primary B cells from cord blood blood
7 chr5:108124200-108141600 Weak transcription Pancreas Pancrea
8 chr5:108124200-108141800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr5:108124200-108142800 Weak transcription Ovary ovary
10 chr5:108124400-108139800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr5:108124600-108146600 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr5:108124800-108149400 Weak transcription Stomach Smooth Muscle stomach
13 chr5:108125200-108139200 Weak transcription Brain Hippocampus Middle brain
14 chr5:108132400-108139600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
15 chr5:108132800-108139200 Weak transcription Lung lung
16 chr5:108133200-108146600 Weak transcription Left Ventricle heart
17 chr5:108133200-108146800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
18 chr5:108133400-108141600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
19 chr5:108134600-108139200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
20 chr5:108134600-108146600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr5:108136400-108139200 Weak transcription Adipose Nuclei Adipose
22 chr5:108136400-108144600 Weak transcription Brain Cingulate Gyrus brain
23 chr5:108136600-108141600 Weak transcription Fetal Stomach stomach
24 chr5:108137600-108141800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr5:108137600-108146000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
26 chr5:108137600-108153000 Weak transcription Osteobl bone
27 chr5:108137800-108139400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr5:108137800-108149000 Weak transcription Rectal Smooth Muscle rectum
29 chr5:108138000-108140000 Weak transcription HUVEC blood vessel
30 chr5:108138000-108153200 Weak transcription Muscle Satellite Cultured Cells --
31 chr5:108138200-108139200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr5:108138400-108139200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr5:108138600-108139200 ZNF genes & repeats Fetal Kidney kidney
34 chr5:108138600-108140400 ZNF genes & repeats Primary hematopoietic stem cells blood
35 chr5:108138600-108140600 ZNF genes & repeats Fetal Lung lung
36 chr5:108138800-108139200 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr5:108138800-108139400 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
38 chr5:108138800-108139800 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015