Variant report

Variant	rs61336904
Chromosome Location	chr16:52149912-52149913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11270313	1.00[AMR][1000 genomes]
rs3079475	0.86[ASN][1000 genomes]
rs56655581	0.86[ASN][1000 genomes]
rs57219771	0.86[ASN][1000 genomes]
rs8059073	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492248	chr16:51681902-52456082	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv34024	chr16:51878565-52316530	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1058257	chr16:52093549-52271815	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:52147200-52150200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr16:52147200-52151400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr16:52147200-52152600	Weak transcription	Pancreas	Pancrea
4	chr16:52147400-52151600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr16:52147800-52152200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr16:52148000-52150400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr16:52148400-52150200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr16:52148800-52151200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:52149000-52150000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:52149000-52151200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr16:52149000-52151400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr16:52149000-52154400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:52149200-52150200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr16:52149200-52150400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr16:52149800-52152000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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