Variant report

Variant	rs6134181
Chromosome Location	chr20:11280130-11280131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10432736	0.93[EUR][1000 genomes]
rs10485747	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11697289	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12625544	0.83[EUR][1000 genomes]
rs12625567	0.83[EUR][1000 genomes]
rs1997878	0.83[EUR][1000 genomes]
rs2103762	0.83[EUR][1000 genomes]
rs2223861	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2327377	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2327379	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35418295	0.93[EUR][1000 genomes]
rs35742586	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4449203	0.88[EUR][1000 genomes]
rs4473452	0.86[EUR][1000 genomes]
rs4473453	0.88[EUR][1000 genomes]
rs4485619	0.93[EUR][1000 genomes]
rs4491786	0.88[EUR][1000 genomes]
rs4528833	0.82[EUR][1000 genomes]
rs4538269	0.81[EUR][1000 genomes]
rs4541301	0.81[EUR][1000 genomes]
rs4564855	0.88[EUR][1000 genomes]
rs4813986	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4813987	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6033108	0.93[EUR][1000 genomes]
rs6033119	0.88[EUR][1000 genomes]
rs6033120	0.88[EUR][1000 genomes]
rs6033121	0.83[EUR][1000 genomes]
rs6040563	0.88[EUR][1000 genomes]
rs6040568	0.88[EUR][1000 genomes]
rs6040571	0.88[EUR][1000 genomes]
rs6040572	0.88[EUR][1000 genomes]
rs6040577	0.83[EUR][1000 genomes]
rs6040582	0.83[EUR][1000 genomes]
rs6040583	0.83[EUR][1000 genomes]
rs6040591	0.82[EUR][1000 genomes]
rs6040592	0.82[EUR][1000 genomes]
rs6104740	0.88[EUR][1000 genomes]
rs6108922	0.88[EUR][1000 genomes]
rs6108923	0.88[EUR][1000 genomes]
rs6108929	0.88[EUR][1000 genomes]
rs6134183	0.84[EUR][1000 genomes]
rs6134185	0.81[EUR][1000 genomes]
rs6134190	0.86[EUR][1000 genomes]
rs6134191	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6134192	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6134198	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6134204	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6134205	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62191844	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs714655	0.92[CEU][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs715370	0.88[EUR][1000 genomes]
rs715371	0.88[EUR][1000 genomes]
rs715372	0.88[EUR][1000 genomes]
rs742822	0.93[EUR][1000 genomes]
rs8114418	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8119263	0.88[EUR][1000 genomes]
rs8119401	0.88[EUR][1000 genomes]
rs932460	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv458869	chr20:11271614-11306751	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585417	chr20:11271614-11306751	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11277600-11282400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:11278200-11282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr20:11278200-11282400	Weak transcription	HMEC	breast
4	chr20:11278200-11282400	Weak transcription	NHEK	skin
5	chr20:11278200-11282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:11278400-11282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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