Variant report

Variant	rs4813986
Chromosome Location	chr20:11315124-11315125
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10432736	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10485747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1107551	0.87[ASN][1000 genomes]
rs11087022	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11087023	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11697289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11697845	0.82[ASN][1000 genomes]
rs11698552	0.82[ASN][1000 genomes]
rs12625544	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12625567	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1883970	0.82[ASN][1000 genomes]
rs1997878	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2103762	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2143872	0.81[ASN][1000 genomes]
rs2143874	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2223861	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327377	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2327379	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327403	0.82[ASN][1000 genomes]
rs28374547	0.81[ASN][1000 genomes]
rs35418295	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35742586	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35961934	0.89[ASN][1000 genomes]
rs4347904	0.82[ASN][1000 genomes]
rs4359714	0.82[ASN][1000 genomes]
rs4440032	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4449203	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4468879	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4473452	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4473453	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4485619	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4491786	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4528833	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4538269	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4541301	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4564855	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4586703	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4813054	0.82[ASN][1000 genomes]
rs4813055	0.82[ASN][1000 genomes]
rs4813056	0.82[ASN][1000 genomes]
rs4813987	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4813988	0.82[ASN][1000 genomes]
rs4813989	0.82[ASN][1000 genomes]
rs4813990	0.82[ASN][1000 genomes]
rs4813991	0.82[ASN][1000 genomes]
rs59242255	0.81[ASN][1000 genomes]
rs6033108	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6033110	0.81[ASN][1000 genomes]
rs6033119	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6033120	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6033121	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6040563	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6040568	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6040569	0.83[ASN][1000 genomes]
rs6040571	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6040572	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6040575	0.80[ASN][1000 genomes]
rs6040577	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6040578	0.82[ASN][1000 genomes]
rs6040582	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6040583	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6040587	0.85[EUR][1000 genomes]
rs6040591	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6040592	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6104740	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108922	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108923	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6108927	0.83[ASN][1000 genomes]
rs6108929	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6131193	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6131194	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6131195	0.82[ASN][1000 genomes]
rs6131196	0.82[ASN][1000 genomes]
rs6131197	0.82[ASN][1000 genomes]
rs6131199	0.82[ASN][1000 genomes]
rs6134181	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6134190	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6134191	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6134192	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6134198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6134204	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6134205	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6134212	0.82[ASN][1000 genomes]
rs6134215	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6134216	0.82[ASN][1000 genomes]
rs6134217	0.82[ASN][1000 genomes]
rs6134219	0.82[ASN][1000 genomes]
rs6134220	0.82[ASN][1000 genomes]
rs6134221	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6134223	0.89[ASN][1000 genomes]
rs62191844	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62193969	0.82[ASN][1000 genomes]
rs68130714	0.82[ASN][1000 genomes]
rs714655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs715370	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs715371	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs715372	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs742822	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8114418	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8119263	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8119401	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs932460	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11310200-11315200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr20:11310200-11315200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:11310200-11315400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:11312000-11323200	Weak transcription	Psoas Muscle	Psoas
5	chr20:11313000-11317200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:11313400-11315200	Weak transcription	NHEK	skin
7	chr20:11313400-11315400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:11313400-11315400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr20:11313600-11315200	Weak transcription	HMEC	breast
10	chr20:11313600-11315400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr20:11314000-11323000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr20:11314600-11315800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr20:11314600-11315800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr20:11314600-11317200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr20:11314800-11315800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr20:11314800-11315800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr20:11314800-11315800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr20:11315000-11315200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr20:11315000-11315400	Enhancers	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links