Variant report

Variant	rs6033110
Chromosome Location	chr20:11303532-11303533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10432736	0.84[ASN][1000 genomes]
rs10485747	0.84[ASN][1000 genomes]
rs11697289	0.84[ASN][1000 genomes]
rs11697845	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11698552	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1883968	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1883970	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2143872	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2207129	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2223861	0.81[ASN][1000 genomes]
rs2327377	0.84[ASN][1000 genomes]
rs2327379	0.80[ASN][1000 genomes]
rs2327403	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2327404	0.82[ASN][1000 genomes]
rs28374547	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35742586	0.83[ASN][1000 genomes]
rs4347904	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4359714	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4449203	0.80[ASN][1000 genomes]
rs4473452	0.80[ASN][1000 genomes]
rs4473453	0.80[ASN][1000 genomes]
rs4485619	0.84[ASN][1000 genomes]
rs4491786	0.80[ASN][1000 genomes]
rs4564855	0.80[ASN][1000 genomes]
rs4813054	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813055	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813056	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813985	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4813986	0.81[ASN][1000 genomes]
rs4813988	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813989	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813990	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813991	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59242255	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6033108	0.84[ASN][1000 genomes]
rs6033112	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6033119	0.80[ASN][1000 genomes]
rs6033120	0.80[ASN][1000 genomes]
rs6040541	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6040563	0.80[ASN][1000 genomes]
rs6040568	0.80[ASN][1000 genomes]
rs6040569	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6040571	0.80[ASN][1000 genomes]
rs6040572	0.80[ASN][1000 genomes]
rs6040575	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6040576	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6040578	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6074271	0.82[EUR][1000 genomes]
rs6078121	0.82[EUR][1000 genomes]
rs6078122	0.82[EUR][1000 genomes]
rs6104740	0.80[ASN][1000 genomes]
rs6108909	0.84[YRI][hapmap]
rs6108922	0.80[ASN][1000 genomes]
rs6108923	0.80[ASN][1000 genomes]
rs6108927	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6108929	0.80[ASN][1000 genomes]
rs6131195	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6131196	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6131197	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6131199	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6131200	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6134180	0.82[EUR][1000 genomes]
rs6134190	0.84[ASN][1000 genomes]
rs6134191	0.83[ASN][1000 genomes]
rs6134192	0.83[ASN][1000 genomes]
rs6134204	0.81[ASN][1000 genomes]
rs6134205	0.82[CEU][hapmap];0.83[CHB][hapmap];0.80[ASN][1000 genomes]
rs6134212	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6134216	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6134217	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6134219	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6134220	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62193969	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68130714	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs714655	0.81[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs715370	0.80[ASN][1000 genomes]
rs715371	0.80[ASN][1000 genomes]
rs715372	0.80[ASN][1000 genomes]
rs742822	0.83[ASN][1000 genomes]
rs8114418	0.84[ASN][1000 genomes]
rs8119263	0.80[ASN][1000 genomes]
rs8119401	0.80[ASN][1000 genomes]
rs932460	0.80[ASN][1000 genomes]
rs987743	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv458869	chr20:11271614-11306751	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585417	chr20:11271614-11306751	Weak transcription Enhancers ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11298800-11305200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:11299800-11310200	Weak transcription	Pancreas	Pancrea

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