Variant report

Variant	rs6033112
Chromosome Location	chr20:11306783-11306784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11697845	0.85[EUR][1000 genomes]
rs11698552	0.84[EUR][1000 genomes]
rs1883968	0.83[EUR][1000 genomes]
rs1883970	0.84[EUR][1000 genomes]
rs2143872	0.84[EUR][1000 genomes]
rs2207129	0.83[EUR][1000 genomes]
rs2223866	0.84[ASN][1000 genomes]
rs2223867	0.84[ASN][1000 genomes]
rs2223868	0.83[ASN][1000 genomes]
rs2327403	0.84[EUR][1000 genomes]
rs28374547	0.84[EUR][1000 genomes]
rs35418295	0.82[ASN][1000 genomes]
rs4347904	0.85[EUR][1000 genomes]
rs4359714	0.86[EUR][1000 genomes]
rs4813054	0.85[EUR][1000 genomes]
rs4813055	0.84[EUR][1000 genomes]
rs4813056	0.84[EUR][1000 genomes]
rs4813985	0.97[EUR][1000 genomes]
rs4813988	0.85[EUR][1000 genomes]
rs4813989	0.85[EUR][1000 genomes]
rs4813990	0.84[EUR][1000 genomes]
rs4813991	0.84[EUR][1000 genomes]
rs4813992	0.84[ASN][1000 genomes]
rs59242255	0.83[EUR][1000 genomes]
rs6033110	0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6040541	0.96[EUR][1000 genomes]
rs6040569	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6040575	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6040576	0.88[EUR][1000 genomes]
rs6040578	0.88[EUR][1000 genomes]
rs6074271	0.81[EUR][1000 genomes]
rs6078121	0.81[EUR][1000 genomes]
rs6078122	0.81[EUR][1000 genomes]
rs6108927	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6131195	0.85[EUR][1000 genomes]
rs6131196	0.85[EUR][1000 genomes]
rs6131197	0.85[EUR][1000 genomes]
rs6131199	0.82[EUR][1000 genomes]
rs6131200	0.83[EUR][1000 genomes]
rs6131201	0.83[ASN][1000 genomes]
rs6134180	0.81[EUR][1000 genomes]
rs6134205	0.82[CEU][hapmap]
rs6134212	0.85[EUR][1000 genomes]
rs6134216	0.85[EUR][1000 genomes]
rs6134217	0.85[EUR][1000 genomes]
rs6134219	0.85[EUR][1000 genomes]
rs6134220	0.82[EUR][1000 genomes]
rs6134225	0.84[ASN][1000 genomes]
rs6134226	0.84[ASN][1000 genomes]
rs6134227	0.84[ASN][1000 genomes]
rs6134228	0.83[ASN][1000 genomes]
rs6134229	0.83[ASN][1000 genomes]
rs62193969	0.83[EUR][1000 genomes]
rs68130714	0.83[EUR][1000 genomes]
rs714655	0.81[CEU][hapmap];0.83[CHB][hapmap]
rs8122050	0.83[ASN][1000 genomes]
rs987743	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv585415	chr20:11134907-11383327	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11299800-11310200	Weak transcription	Pancreas	Pancrea
2	chr20:11304000-11307800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr20:11306200-11309800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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