Variant report

Variant	rs6135308
Chromosome Location	chr20:14900403-14900404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:14898344..14901833-chr20:14901900..14905742,3	MCF-7	breast:
2	chr20:14892181..14894488-chr20:14900218..14901785,2	MCF-7	breast:
3	chr20:14861831..14864729-chr20:14900336..14902240,2	MCF-7	breast:

Extended variants
information (count: 234 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17268756	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1964912	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4561719	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6034062	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6034063	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6034064	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6034066	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6042996	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6042998	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6042999	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6043000	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6043001	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6043003	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6043004	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6043005	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6043009	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6043010	0.90[EUR][1000 genomes]
rs6043014	0.90[EUR][1000 genomes]
rs6110473	0.89[EUR][1000 genomes]
rs6131626	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6135304	0.87[AFR][1000 genomes]
rs6135307	0.97[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6135313	0.84[AMR][1000 genomes]
rs6135316	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67819281	0.87[EUR][1000 genomes]
rs7262639	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7264049	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8183300	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:206 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059579	chr20:14518849-14941319	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3512353	chr20:14560028-15087709	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3512354	chr20:14560087-15087661	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv585452	chr20:14569942-14986602	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv912695	chr20:14579703-14992542	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv585453	chr20:14609957-14936935	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv585454	chr20:14609957-14967506	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1066070	chr20:14627662-15180181	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1056497	chr20:14628216-14910061	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv868932	chr20:14629123-14928627	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2751906	chr20:14658364-15026100	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv949548	chr20:14667415-15125972	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv948395	chr20:14667415-15161670	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv585456	chr20:14668243-14954943	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv912699	chr20:14672177-14901776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1058831	chr20:14677058-14941319	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv544191	chr20:14677058-14941319	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv1830386	chr20:14690185-14983868	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	esv2422304	chr20:14699810-14926297	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv1067404	chr20:14699839-14964658	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv544192	chr20:14699839-14964658	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv1057007	chr20:14700039-14964519	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv544193	chr20:14700039-14964519	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv916020	chr20:14700045-15134231	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv585464	chr20:14705888-15082546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv1066377	chr20:14707770-15102827	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv1059014	chr20:14707770-15103304	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
28	nsv585467	chr20:14709451-14995343	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
29	nsv1056352	chr20:14711052-14910061	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv1057868	chr20:14711052-15101602	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
31	nsv1062307	chr20:14718196-15057673	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
32	nsv1062274	chr20:14718196-15103304	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
33	nsv1055948	chr20:14719023-14938704	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
34	nsv1065316	chr20:14720407-14974683	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
35	nsv1058171	chr20:14728555-14991435	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	nsv585469	chr20:14729891-15100284	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
37	esv1828257	chr20:14731344-14988485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
38	esv1830315	chr20:14731344-14988485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
39	nsv458886	chr20:14737843-14954943	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
40	nsv585476	chr20:14737843-14954943	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
41	nsv470541	chr20:14737843-15073680	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
42	nsv912720	chr20:14739839-14901776	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
43	nsv912721	chr20:14743905-14901776	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
44	nsv912722	chr20:14743905-14917269	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
45	nsv912723	chr20:14743905-14992542	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
46	nsv1060566	chr20:14746390-14910061	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
47	nsv544195	chr20:14746390-14910061	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
48	nsv1058947	chr20:14746390-14941319	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
49	nsv544196	chr20:14746390-14941319	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
50	nsv1066086	chr20:14746390-14986096	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14896600-14902200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr20:14898800-14900800	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr20:14898800-14900800	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr20:14899000-14900800	Enhancers	Fetal Brain Male	brain
5	chr20:14899400-14901200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr20:14899600-14900600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr20:14899600-14900800	Enhancers	Brain Angular Gyrus	brain
8	chr20:14899600-14901000	Enhancers	Fetal Kidney	kidney
9	chr20:14899600-14901200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:14899800-14900800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr20:14899800-14900800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:14899800-14900800	Enhancers	Brain Cingulate Gyrus	brain
13	chr20:14899800-14900800	Enhancers	Brain Substantia Nigra	brain
14	chr20:14899800-14901200	Enhancers	Fetal Lung	lung
15	chr20:14899800-14902400	Enhancers	Colon Smooth Muscle	Colon
16	chr20:14900000-14900600	Weak transcription	Gastric	stomach
17	chr20:14900000-14900600	Flanking Active TSS	NHDF-Ad	bronchial
18	chr20:14900000-14900800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr20:14900000-14900800	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr20:14900000-14900800	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr20:14900000-14900800	Enhancers	Brain Hippocampus Middle	brain
22	chr20:14900000-14900800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr20:14900000-14900800	Enhancers	A549	lung
24	chr20:14900000-14901400	Enhancers	HUVEC	blood vessel
25	chr20:14900200-14900800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr20:14900200-14900800	Enhancers	Fetal Brain Female	brain
27	chr20:14900200-14900800	Enhancers	Fetal Muscle Leg	muscle
28	chr20:14900200-14900800	Enhancers	Fetal Stomach	stomach
29	chr20:14900200-14901000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr20:14900200-14901000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr20:14900200-14901000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr20:14900200-14901000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr20:14900200-14901000	Enhancers	Brain Germinal Matrix	brain
34	chr20:14900200-14901000	Enhancers	Fetal Intestine Large	intestine
35	chr20:14900200-14901000	Enhancers	Fetal Intestine Small	intestine
36	chr20:14900200-14901000	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr20:14900200-14901200	Enhancers	HMEC	breast
38	chr20:14900400-14900600	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr20:14900400-14900600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr20:14900400-14900600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr20:14900400-14900600	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr20:14900400-14900600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr20:14900400-14900600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr20:14900400-14900600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr20:14900400-14900600	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr20:14900400-14900800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr20:14900400-14900800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr20:14900400-14900800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr20:14900400-14900800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr20:14900400-14900800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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